Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0838
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   0.42 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   3.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   3.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   5.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.8  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 0.42
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 316 VRLSHSDSSSLLICQARPGLVSGSTSP-SGVMHGPA 212
           + L     S L   + R GLVSGS++P +G  H PA
Sbjct: 370 IELQDLRMSPLPSIRNRSGLVSGSSTPGTGREHDPA 405


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 99  ALIVLFIIFTALA*QTPHVQALF 31
           ALI + I+ TAL   T  +  LF
Sbjct: 445 ALITMLIVLTALGLPTNDISLLF 467


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 325 HPERDRTPVHRGGKPALEATSG 390
           HP R  +P H+ G   +  T G
Sbjct: 327 HPHRGSSPHHQHGNHTMGPTMG 348


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 346 GSGPVRDGL*VRLSHSDSSSLLICQARPGLVSGSTSPSGV 227
           G G  R  +  RLS   +  +L+ +A P   +G+  PS +
Sbjct: 75  GGGAARAVVAGRLSEVSNWKVLLLEAGPDEPAGAEIPSNL 114


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -1

Query: 362 PPRWTGVRSRSGWS 321
           P  W GV   S WS
Sbjct: 161 PTNWVGVFGGSAWS 174


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -1

Query: 362 PPRWTGVRSRSGWS 321
           P  W GV   S WS
Sbjct: 161 PTNWVGVFGGSAWS 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,776
Number of Sequences: 438
Number of extensions: 2588
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)