Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0838
         (395 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43720.1 68416.m04668 protease inhibitor/seed storage/lipid t...    30   0.49 
At3g49960.1 68416.m05463 peroxidase, putative identical to perox...    28   2.0  
At5g52140.1 68418.m06472 zinc finger protein-related                   27   6.0  
At1g43760.1 68414.m05034 hypothetical protein                          27   6.0  
At1g34070.1 68414.m04224 hypothetical protein                          27   6.0  
At1g23460.1 68414.m02939 polygalacturonase, putative / pectinase...    27   6.0  
At5g22090.1 68418.m02572 expressed protein                             26   7.9  
At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co...    26   7.9  
At4g00020.1 68417.m00002 BRCA2 repeat-containing protein low sim...    26   7.9  

>At3g43720.1 68416.m04668 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 193

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 265 PGLVSGSTSPSGVMHGPADGRGNDKLND-PYT 173
           PG +SG+ SP G   GP+  RG+D  +  PY+
Sbjct: 144 PGSMSGAESPGGFGSGPSASRGSDAPSSAPYS 175


>At3g49960.1 68416.m05463 peroxidase, putative identical to
           peroxidase ATP21a [Arabidopsis thaliana]
           gi|1546696|emb|CAA67339
          Length = 329

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -2

Query: 262 GLVSGSTSPSGVMHGPADGRGNDKLNDPYTQNSHT 158
           GLVS ++S  G + GP+D    DKLN  +T+N  T
Sbjct: 154 GLVSTASSVEGNLPGPSD--NVDKLNALFTKNKLT 186


>At5g52140.1 68418.m06472 zinc finger protein-related
          Length = 277

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 262 GLVSGSTSPSGVMHGPADGRGNDKLNDPYTQ 170
           G  + + SPS + H P D   ND  N  Y +
Sbjct: 153 GRYTHTHSPSSISHNPTDDENNDPENMTYEE 183


>At1g43760.1 68414.m05034 hypothetical protein
          Length = 626

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 243 VLPDTNPGLA*QINRLELSEWLRRTQRPSRTGPDPCPPRRKTS 371
           +LP+  P L   I+   + +W  R +  S+      PPR  TS
Sbjct: 16  LLPEITPSLRQNISGYNIFDWKGRVRSRSKKRSSSTPPRLITS 58


>At1g34070.1 68414.m04224 hypothetical protein
          Length = 308

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 310 LSHSDSSSLLICQARPGLVSGSTSPSGVMHGPADGRGND 194
           + HS SS++L C   P + +   S    M     GRGN+
Sbjct: 210 VDHSSSSTVLACSEAPPVTNFQRSGGNQMGYRGRGRGNN 248


>At1g23460.1 68414.m02939 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase GB:BAA88472
           GI:6624205 from (Cucumis sativus); contains Pfam profile
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 459

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 202 PGHLLDRA*LLKDSCYRILTQVLLDKSIDSSCRNG 306
           PGH +    L KD+   I+TQV+LD ++     NG
Sbjct: 282 PGHGISIGSLGKDNTTGIVTQVVLDTALLRETTNG 316


>At5g22090.1 68418.m02572 expressed protein
          Length = 463

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -1

Query: 332 SGWSLSPSQPFRQLESIDLSSKTWVS 255
           S  S +PS   R+  S DLSSKTWVS
Sbjct: 31  SNTSSAPS--LRRTFSADLSSKTWVS 54


>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 587

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 302 MAETDSETIPNGTGPLSTEEENQRLKQRPAD 394
           MAE D +     T P + EEE++  +++P D
Sbjct: 70  MAEGDDDQAEEETNPEAEEEEDEEEEEKPDD 100


>At4g00020.1 68417.m00002 BRCA2 repeat-containing protein low
           similarity to SP|P51587 Breast cancer type 2
           susceptibility protein {Homo sapiens}; contains Pfam
           profile PF00634: BRCA2 repeat
          Length = 765

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 271 LDKSIDSSCRNG*DGLRDHPERDRTPV-HRGGKP 369
           +++S  SS ++G  GL+ H E D T V H  G P
Sbjct: 205 VNQSSSSSQQHGWSGLKTHEEFDATVVKHHSGTP 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,027,543
Number of Sequences: 28952
Number of extensions: 192902
Number of successful extensions: 549
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)