BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0838 (395 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g43720.1 68416.m04668 protease inhibitor/seed storage/lipid t... 30 0.49 At3g49960.1 68416.m05463 peroxidase, putative identical to perox... 28 2.0 At5g52140.1 68418.m06472 zinc finger protein-related 27 6.0 At1g43760.1 68414.m05034 hypothetical protein 27 6.0 At1g34070.1 68414.m04224 hypothetical protein 27 6.0 At1g23460.1 68414.m02939 polygalacturonase, putative / pectinase... 27 6.0 At5g22090.1 68418.m02572 expressed protein 26 7.9 At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co... 26 7.9 At4g00020.1 68417.m00002 BRCA2 repeat-containing protein low sim... 26 7.9 >At3g43720.1 68416.m04668 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 Length = 193 Score = 30.3 bits (65), Expect = 0.49 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = -2 Query: 265 PGLVSGSTSPSGVMHGPADGRGNDKLND-PYT 173 PG +SG+ SP G GP+ RG+D + PY+ Sbjct: 144 PGSMSGAESPGGFGSGPSASRGSDAPSSAPYS 175 >At3g49960.1 68416.m05463 peroxidase, putative identical to peroxidase ATP21a [Arabidopsis thaliana] gi|1546696|emb|CAA67339 Length = 329 Score = 28.3 bits (60), Expect = 2.0 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = -2 Query: 262 GLVSGSTSPSGVMHGPADGRGNDKLNDPYTQNSHT 158 GLVS ++S G + GP+D DKLN +T+N T Sbjct: 154 GLVSTASSVEGNLPGPSD--NVDKLNALFTKNKLT 186 >At5g52140.1 68418.m06472 zinc finger protein-related Length = 277 Score = 26.6 bits (56), Expect = 6.0 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = -2 Query: 262 GLVSGSTSPSGVMHGPADGRGNDKLNDPYTQ 170 G + + SPS + H P D ND N Y + Sbjct: 153 GRYTHTHSPSSISHNPTDDENNDPENMTYEE 183 >At1g43760.1 68414.m05034 hypothetical protein Length = 626 Score = 26.6 bits (56), Expect = 6.0 Identities = 13/43 (30%), Positives = 20/43 (46%) Frame = +3 Query: 243 VLPDTNPGLA*QINRLELSEWLRRTQRPSRTGPDPCPPRRKTS 371 +LP+ P L I+ + +W R + S+ PPR TS Sbjct: 16 LLPEITPSLRQNISGYNIFDWKGRVRSRSKKRSSSTPPRLITS 58 >At1g34070.1 68414.m04224 hypothetical protein Length = 308 Score = 26.6 bits (56), Expect = 6.0 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = -2 Query: 310 LSHSDSSSLLICQARPGLVSGSTSPSGVMHGPADGRGND 194 + HS SS++L C P + + S M GRGN+ Sbjct: 210 VDHSSSSTVLACSEAPPVTNFQRSGGNQMGYRGRGRGNN 248 >At1g23460.1 68414.m02939 polygalacturonase, putative / pectinase, putative similar to polygalacturonase GB:BAA88472 GI:6624205 from (Cucumis sativus); contains Pfam profile PF00295: Glycosyl hydrolases family 28 (polygalacturonases) Length = 459 Score = 26.6 bits (56), Expect = 6.0 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +1 Query: 202 PGHLLDRA*LLKDSCYRILTQVLLDKSIDSSCRNG 306 PGH + L KD+ I+TQV+LD ++ NG Sbjct: 282 PGHGISIGSLGKDNTTGIVTQVVLDTALLRETTNG 316 >At5g22090.1 68418.m02572 expressed protein Length = 463 Score = 26.2 bits (55), Expect = 7.9 Identities = 15/26 (57%), Positives = 17/26 (65%) Frame = -1 Query: 332 SGWSLSPSQPFRQLESIDLSSKTWVS 255 S S +PS R+ S DLSSKTWVS Sbjct: 31 SNTSSAPS--LRRTFSADLSSKTWVS 54 >At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-containing protein contains Pfam profile PF01426: BAH domain Length = 587 Score = 26.2 bits (55), Expect = 7.9 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = +2 Query: 302 MAETDSETIPNGTGPLSTEEENQRLKQRPAD 394 MAE D + T P + EEE++ +++P D Sbjct: 70 MAEGDDDQAEEETNPEAEEEEDEEEEEKPDD 100 >At4g00020.1 68417.m00002 BRCA2 repeat-containing protein low similarity to SP|P51587 Breast cancer type 2 susceptibility protein {Homo sapiens}; contains Pfam profile PF00634: BRCA2 repeat Length = 765 Score = 26.2 bits (55), Expect = 7.9 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +1 Query: 271 LDKSIDSSCRNG*DGLRDHPERDRTPV-HRGGKP 369 +++S SS ++G GL+ H E D T V H G P Sbjct: 205 VNQSSSSSQQHGWSGLKTHEEFDATVVKHHSGTP 238 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,027,543 Number of Sequences: 28952 Number of extensions: 192902 Number of successful extensions: 549 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 538 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 549 length of database: 12,070,560 effective HSP length: 74 effective length of database: 9,928,112 effective search space used: 565902384 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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