Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0837
         (648 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4M578 Cluster: ErfK/YbiS/YcfS/YnhG family protein prec...    34   3.4  
UniRef50_A5BNV2 Cluster: Putative uncharacterized protein; n=2; ...    34   3.4  
UniRef50_UPI000069FF5A Cluster: Dynamin-binding protein (Scaffol...    33   7.9  

>UniRef50_A4M578 Cluster: ErfK/YbiS/YcfS/YnhG family protein
           precursor; n=2; Geobacter|Rep: ErfK/YbiS/YcfS/YnhG
           family protein precursor - Geobacter bemidjiensis Bem
          Length = 307

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
 Frame = +2

Query: 476 PSGVNWLPGPITSTT*MPPHNLRHEF*GLSMIT---------TAALPSNRNSLLFHGRNM 628
           P G   +   ITS +   P ++RHE  GL  I          T AL  +R ++L HG N 
Sbjct: 146 PLGTYTVIQKITSPSWHVPDSIRHEVPGLPSIVPPGPSNPLGTHALRLSRANILIHGTNR 205

Query: 629 PWG 637
           PWG
Sbjct: 206 PWG 208


>UniRef50_A5BNV2 Cluster: Putative uncharacterized protein; n=2;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 456

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = -3

Query: 196 KSTSNVFYLILSPAEFYTFMCLCLYGLIFSFHEFVTTTILKKFHFNMNF 50
           KS SN   ++  P E    +   L GL  SFH FVTT IL     +M+F
Sbjct: 148 KSLSNELSIVGKPVEDSDLILXVLNGLNSSFHSFVTTYILLANEKSMHF 196


>UniRef50_UPI000069FF5A Cluster: Dynamin-binding protein (Scaffold
           protein Tuba).; n=7; Tetrapoda|Rep: Dynamin-binding
           protein (Scaffold protein Tuba). - Xenopus tropicalis
          Length = 1551

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 142 FMCLCLYGLIFSFHEFVTTTILKKFHFNMNFLIGFLTKIKETISI 8
           ++C CL GL+F +H+F+ T  L       N    +    +ETI++
Sbjct: 829 YLCCCLIGLMFLYHQFIGTVFLDHASDLENVYKEYCQNHEETIAL 873


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,404,275
Number of Sequences: 1657284
Number of extensions: 11082971
Number of successful extensions: 20123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20102
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)