Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0837
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.9  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    21   8.7  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    21   8.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
 Frame = -2

Query: 146 YIYVFVSLW--TYFFVS 102
           +IY+FVS+W    FFVS
Sbjct: 297 FIYMFVSVWKCLLFFVS 313


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
 Frame = -2

Query: 146 YIYVFVSLW--TYFFVS 102
           +IY+FVS+W    FFVS
Sbjct: 297 FIYMFVSVWKCLLFFVS 313


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
 Frame = -2

Query: 146 YIYVFVSLW--TYFFVS 102
           +IY+FVS+W    FFVS
Sbjct: 297 FIYMFVSVWKCLLFFVS 313


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
 Frame = -2

Query: 146 YIYVFVSLW--TYFFVS 102
           +IY+FVS+W    FFVS
Sbjct: 297 FIYMFVSVWKCLLFFVS 313


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 290 HTIKDDLQLFNNDEALHIPT*TFRIVVFK 376
           H  +    L   ++ L +P  TFR  VFK
Sbjct: 105 HKYQPRFHLVRANDILKLPYSTFRTYVFK 133


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 290 HTIKDDLQLFNNDEALHIPT*TFRIVVFK 376
           H  +    L   ++ L +P  TFR  VFK
Sbjct: 96  HKYQPRFHLVRANDILKLPYSTFRTYVFK 124


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 5/17 (29%), Positives = 13/17 (76%)
 Frame = +3

Query: 300  KMIYNYLIMTKLYIYLL 350
            KM++ +L++  LY+ ++
Sbjct: 1224 KMVFTFLMLNSLYVIVI 1240


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 5/17 (29%), Positives = 13/17 (76%)
 Frame = +3

Query: 300  KMIYNYLIMTKLYIYLL 350
            KM++ +L++  LY+ ++
Sbjct: 1224 KMVFTFLMLNSLYVIVI 1240


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,936
Number of Sequences: 336
Number of extensions: 3255
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)