Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0837
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    28   1.3  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   1.3  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    28   1.3  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   1.8  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   1.8  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    25   9.4  

>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 243 KLKFTTR-GFIHTLVLKNLR-LMCSISFSRRLNSIHLCVCVSM 121
           KL +  R G +  + L +L  ++ S SFSR L  +HL  C+ +
Sbjct: 352 KLPYLQRVGLVKCICLTDLSVILLSGSFSRNLERVHLSYCIGL 394


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -3

Query: 232 HYKRFHTHVSIKKSTSNVFYLILSPAEFYTFMCLCLYGLIFSFHEFVTTTILKKFHFNM 56
           H +RFH  + I    SNV            F C   Y  +FSF  F+ T++   F F +
Sbjct: 87  HCRRFHIAIFIHPYDSNVV----------PFFCFFFYFSLFSFFSFLFTSLHFNFFFRL 135


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 252 YNPKLKFTTRGFIHTLVLKNLRLMCSISFSRRLNSIHLCVCVSMDLFFRFMSL 94
           +NP     + G + TL  K+   +         N  + C+    DLFFR++SL
Sbjct: 440 HNPNGSKQSAGIVTTLYQKDFAKLNRAMNLPTKNLFNACIGAKDDLFFRYLSL 492


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 201  LKNLRLMCSISFSRRLNSIHLCVC 130
            L+N+RL C I FS       +CVC
Sbjct: 1259 LQNVRLSCEIIFSNAYERSSVCVC 1282


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 206 NVCMKPLVVNFNLGLYGS*NINSQRALPHTIKDDLQLFNNDEAL 337
           N+C    VV+++ G Y S +      L +T+ D +++ + DEAL
Sbjct: 338 NLCPSLRVVDYDFGAYESVSREFYTILVNTLHDYIKVISIDEAL 381


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 273 HRGRYLIP*KMIYNYLIMTKLYIYLLRHLG*LYL 374
           +RG  L+  ++IYN +  TK+ +++ R +   YL
Sbjct: 297 YRGNILVIKQLIYNDISSTKVRLFIRRGMSIRYL 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,733
Number of Sequences: 5004
Number of extensions: 49365
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)