BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0837 (648 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 28 1.3 SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 1.3 SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 28 1.3 SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 27 1.8 SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 27 1.8 SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ... 25 9.4 >SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr 2|||Manual Length = 463 Score = 27.9 bits (59), Expect = 1.3 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = -1 Query: 243 KLKFTTR-GFIHTLVLKNLR-LMCSISFSRRLNSIHLCVCVSM 121 KL + R G + + L +L ++ S SFSR L +HL C+ + Sbjct: 352 KLPYLQRVGLVKCICLTDLSVILLSGSFSRNLERVHLSYCIGL 394 >SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual Length = 188 Score = 27.9 bits (59), Expect = 1.3 Identities = 18/59 (30%), Positives = 25/59 (42%) Frame = -3 Query: 232 HYKRFHTHVSIKKSTSNVFYLILSPAEFYTFMCLCLYGLIFSFHEFVTTTILKKFHFNM 56 H +RFH + I SNV F C Y +FSF F+ T++ F F + Sbjct: 87 HCRRFHIAIFIHPYDSNVV----------PFFCFFFYFSLFSFFSFLFTSLHFNFFFRL 135 >SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharomyces pombe|chr 1|||Manual Length = 647 Score = 27.9 bits (59), Expect = 1.3 Identities = 15/53 (28%), Positives = 24/53 (45%) Frame = -1 Query: 252 YNPKLKFTTRGFIHTLVLKNLRLMCSISFSRRLNSIHLCVCVSMDLFFRFMSL 94 +NP + G + TL K+ + N + C+ DLFFR++SL Sbjct: 440 HNPNGSKQSAGIVTTLYQKDFAKLNRAMNLPTKNLFNACIGAKDDLFFRYLSL 492 >SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual Length = 1828 Score = 27.5 bits (58), Expect = 1.8 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -1 Query: 201 LKNLRLMCSISFSRRLNSIHLCVC 130 L+N+RL C I FS +CVC Sbjct: 1259 LQNVRLSCEIIFSNAYERSSVCVC 1282 >SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 935 Score = 27.5 bits (58), Expect = 1.8 Identities = 14/44 (31%), Positives = 25/44 (56%) Frame = +2 Query: 206 NVCMKPLVVNFNLGLYGS*NINSQRALPHTIKDDLQLFNNDEAL 337 N+C VV+++ G Y S + L +T+ D +++ + DEAL Sbjct: 338 NLCPSLRVVDYDFGAYESVSREFYTILVNTLHDYIKVISIDEAL 381 >SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces pombe|chr 1|||Manual Length = 365 Score = 25.0 bits (52), Expect = 9.4 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = +3 Query: 273 HRGRYLIP*KMIYNYLIMTKLYIYLLRHLG*LYL 374 +RG L+ ++IYN + TK+ +++ R + YL Sbjct: 297 YRGNILVIKQLIYNDISSTKVRLFIRRGMSIRYL 330 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,522,733 Number of Sequences: 5004 Number of extensions: 49365 Number of successful extensions: 100 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 100 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 291768710 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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