Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0837
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0151 + 23134467-23134627,23134657-23134803,23135413-231355...    28   5.6  
08_02_0548 - 18489728-18489871,18490185-18490556                       28   7.4  
06_01_1014 - 7936514-7936530,7936768-7936859,7937290-7937581,793...    28   7.4  

>04_04_0151 +
           23134467-23134627,23134657-23134803,23135413-23135512,
           23135554-23135638,23135767-23136419
          Length = 381

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 455 TGGQYHGPSGVNWLPGPITSTT*MPPHNLR 544
           TGG  H P    WL  P  S++ +PP +LR
Sbjct: 244 TGGHVHRPRLSRWLRPPRRSSSPVPPLSLR 273


>08_02_0548 - 18489728-18489871,18490185-18490556
          Length = 171

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 563 SMITTAALPSNRNSLLFHGRNMPWGGAF 646
           +M+ TAA  S+ N  L HG +M +GG F
Sbjct: 90  TMMATAAFLSDPNPPLTHGESMGFGGDF 117


>06_01_1014 -
           7936514-7936530,7936768-7936859,7937290-7937581,
           7937690-7937759,7938131-7938223
          Length = 187

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = -1

Query: 288 GSALCELIF*LPYNPKLKFTTRGFIHTLVLKNLRLMCSISFSRRLNSIHLCVCVSMDLFF 109
           GS LC +I     +P   F        LVL  L L+  +SFS +L S  + +CV + +F+
Sbjct: 6   GSYLCNVISTTTGHPV--FYLASPCGRLVLMKL-LLVDLSFSSQLASYFVIICVIVAVFY 62

Query: 108 RFM 100
            F+
Sbjct: 63  CFL 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,342,413
Number of Sequences: 37544
Number of extensions: 285389
Number of successful extensions: 457
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)