BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0837 (648 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_0151 + 23134467-23134627,23134657-23134803,23135413-231355... 28 5.6 08_02_0548 - 18489728-18489871,18490185-18490556 28 7.4 06_01_1014 - 7936514-7936530,7936768-7936859,7937290-7937581,793... 28 7.4 >04_04_0151 + 23134467-23134627,23134657-23134803,23135413-23135512, 23135554-23135638,23135767-23136419 Length = 381 Score = 28.3 bits (60), Expect = 5.6 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +2 Query: 455 TGGQYHGPSGVNWLPGPITSTT*MPPHNLR 544 TGG H P WL P S++ +PP +LR Sbjct: 244 TGGHVHRPRLSRWLRPPRRSSSPVPPLSLR 273 >08_02_0548 - 18489728-18489871,18490185-18490556 Length = 171 Score = 27.9 bits (59), Expect = 7.4 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +2 Query: 563 SMITTAALPSNRNSLLFHGRNMPWGGAF 646 +M+ TAA S+ N L HG +M +GG F Sbjct: 90 TMMATAAFLSDPNPPLTHGESMGFGGDF 117 >06_01_1014 - 7936514-7936530,7936768-7936859,7937290-7937581, 7937690-7937759,7938131-7938223 Length = 187 Score = 27.9 bits (59), Expect = 7.4 Identities = 21/63 (33%), Positives = 32/63 (50%) Frame = -1 Query: 288 GSALCELIF*LPYNPKLKFTTRGFIHTLVLKNLRLMCSISFSRRLNSIHLCVCVSMDLFF 109 GS LC +I +P F LVL L L+ +SFS +L S + +CV + +F+ Sbjct: 6 GSYLCNVISTTTGHPV--FYLASPCGRLVLMKL-LLVDLSFSSQLASYFVIICVIVAVFY 62 Query: 108 RFM 100 F+ Sbjct: 63 CFL 65 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,342,413 Number of Sequences: 37544 Number of extensions: 285389 Number of successful extensions: 457 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 449 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 457 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1608522592 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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