Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0837
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50197-1|AAA91254.1|  329|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z82270-3|CAB63205.1|  667|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U41546-5|AAC48222.2| 1022|Caenorhabditis elegans Sodium:neurotra...    27   8.7  
AL132876-26|CAC48128.1|  922|Caenorhabditis elegans Hypothetical...    27   8.7  
AL132876-25|CAH04764.1|  930|Caenorhabditis elegans Hypothetical...    27   8.7  
AL132876-9|CAD21661.1|  959|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF016422-7|AAW88391.1|  296|Caenorhabditis elegans Serpentine re...    27   8.7  

>U50197-1|AAA91254.1|  329|Caenorhabditis elegans Hypothetical
           protein F25E2.1 protein.
          Length = 329

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 194 IYV*CVLSHSLAG*ILYIYVFVSLWTYF 111
           +Y+ CV+ H +A  + YI+ F++   YF
Sbjct: 168 LYLICVVEHDVAKVLFYIFAFITTLAYF 195


>Z82270-3|CAB63205.1|  667|Caenorhabditis elegans Hypothetical
           protein F53H2.3 protein.
          Length = 667

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 419 IFYIFLLLSIA*TGGQYHGPSGVNWLPGPITS 514
           I +   LLS +    + HGPS ++W  G +TS
Sbjct: 59  ILHFSCLLSESAQSHRDHGPSSIHWTKGQLTS 90


>Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical
           protein F47B8.5 protein.
          Length = 579

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 142 FMCLCLYGLIFSFHEFVT-TTILKKFHFNMNFLIGFLTKIKETI 14
           F  +CL+ L FSF  F+T +T    FH  + FL+   T  K+ I
Sbjct: 310 FEAICLFSL-FSFFNFITFSTSHFHFHNKIKFLLEGETVYKQKI 352


>U41546-5|AAC48222.2| 1022|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 12
           protein.
          Length = 1022

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 220 FHTHVSIK-KSTSNVFYLILSPAEFYTFMCLCLYGLIFSFH 101
           F  H S+K K+  N     L  A F+  + LC  G IF FH
Sbjct: 533 FMNHFSMKNKAVENRLLAFLCLAGFFLGLPLCAQGGIFVFH 573


>AL132876-26|CAC48128.1|  922|Caenorhabditis elegans Hypothetical
           protein Y105E8A.10c protein.
          Length = 922

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 223 RFHTHVSIKKSTSNVFYLILSPAEFYTFMCL-CLYGLIFSFHEFVTTTILKKFHFNMN 53
           +F T     K T+     I   + ++T   + C YGL  +  E  TTT+ ++F  + N
Sbjct: 266 KFETEEEGLKPTTTAQEKISGVSLYHTISSMPCTYGLATTHREHTTTTVCERFDPSRN 323


>AL132876-25|CAH04764.1|  930|Caenorhabditis elegans Hypothetical
           protein Y105E8A.10b protein.
          Length = 930

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 223 RFHTHVSIKKSTSNVFYLILSPAEFYTFMCL-CLYGLIFSFHEFVTTTILKKFHFNMN 53
           +F T     K T+     I   + ++T   + C YGL  +  E  TTT+ ++F  + N
Sbjct: 274 KFETEEEGLKPTTTAQEKISGVSLYHTISSMPCTYGLATTHREHTTTTVCERFDPSRN 331


>AL132876-9|CAD21661.1|  959|Caenorhabditis elegans Hypothetical
           protein Y105E8A.10a protein.
          Length = 959

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 223 RFHTHVSIKKSTSNVFYLILSPAEFYTFMCL-CLYGLIFSFHEFVTTTILKKFHFNMN 53
           +F T     K T+     I   + ++T   + C YGL  +  E  TTT+ ++F  + N
Sbjct: 303 KFETEEEGLKPTTTAQEKISGVSLYHTISSMPCTYGLATTHREHTTTTVCERFDPSRN 360


>AF016422-7|AAW88391.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 59 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +1

Query: 388 FTSTTCELHTYF-LYFFIIK 444
           F+ TTC L+TYF L+ F IK
Sbjct: 15  FSVTTCSLNTYFVLFIFFIK 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,918,023
Number of Sequences: 27780
Number of extensions: 281966
Number of successful extensions: 599
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)