Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0837
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g07530.1 68417.m01179 hypothetical protein                          31   0.50 
At3g58020.1 68416.m06466 DNAJ heat shock N-terminal domain-conta...    30   1.5  
At2g34980.1 68415.m04292 phosphatidylinositolglycan synthase fam...    27   8.1  

>At4g07530.1 68417.m01179 hypothetical protein 
          Length = 818

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = -3

Query: 211 HVSIKKSTSNVFYLILSPAEFYTFMCLCLYGLIFSFHEFV 92
           H++ ++  S+ F+L+LSP+  +  + L L  L+FSF   V
Sbjct: 44  HLTSRRKISSFFFLLLSPSFLFYSLLLDLPSLLFSFISLV 83


>At3g58020.1 68416.m06466 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 580

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 232 HYKRFHTHVSIKKSTSNVFYLILSPAEFYTFMCLCLY 122
           H+   H H     + +NV  L+LS   F+ F+C+ ++
Sbjct: 529 HHHHHHHHHHHNSTATNVLILLLSLLGFFIFVCIVIF 565


>At2g34980.1 68415.m04292 phosphatidylinositolglycan synthase family
           protein similar to SP|Q92535 Phosphatidylinositol-glycan
           biosynthesis, class C protein (PIG-C) {Homo sapiens}
          Length = 303

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 208 VSIKKS-TSNVFYLILSPAEFYTFMCLCLYGLIFSFHEFVTTTILKKFHFNMNFLIGF 38
           +S+  S  ++VF     P+  + F  +     +F F   VT  I KKF+F ++ L  F
Sbjct: 186 ISVNASIVASVFVASRLPSRLHVFAVMLFSLQVFLFAPLVTYCI-KKFNFGLHLLFSF 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,754,657
Number of Sequences: 28952
Number of extensions: 244542
Number of successful extensions: 441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)