Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0835
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_10132| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_1289| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3) 29 4.3
SB_37802| Best HMM Match : RnaseH (HMM E-Value=0.69) 29 4.3
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_52987| Best HMM Match : RBM1CTR (HMM E-Value=7) 28 7.5
SB_24005| Best HMM Match : TFIIB (HMM E-Value=0.0014) 28 7.5
SB_23695| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_59606| Best HMM Match : rve (HMM E-Value=0.00032) 28 7.5
SB_58483| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3) 28 7.5
SB_56242| Best HMM Match : Sigma54_activat (HMM E-Value=1.2) 28 7.5
SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_38271| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_30310| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 7.5
SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59) 28 7.5
SB_15193| Best HMM Match : rve (HMM E-Value=0.00021) 28 7.5
SB_14783| Best HMM Match : rve (HMM E-Value=0.00014) 28 7.5
SB_9972| Best HMM Match : rve (HMM E-Value=0.16) 28 7.5
SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 388 SEVMLDSVADMRVDTLVLLLYRNTSMFTYL-PQNQLSKDFLDPCCGSTPETLQDHLHQGP 564
+ M+D++ + RV+ + LLL SM +L P+ L+ C +TP+ H P
Sbjct: 427 NSAMMDALLNNRVEFVKLLLENGVSMGQFLTPERLLALYRGVRTCNATPDNNNRACHTTP 486
Query: 565 NSSHSYCPHNSYPTTKR 615
++ C H KR
Sbjct: 487 GNNKREC-HAKPDNNKR 502
>SB_10132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +2
Query: 191 TPLPEVTQEA-SALPLSAADTERCYWWS---FWIPRWPFWRQHFP 313
TPLP T + + P DT YW + +W P P+W + P
Sbjct: 29 TPLPYWTPHSLTRHPYPLLDTHIPYWTAHIPYWTPYLPYWTPYLP 73
>SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = -3
Query: 467 NIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESI---RRVSAAKGNAAS 297
N D+F +++ + + R S T+S+I + +A TT++++I + A++G
Sbjct: 493 NKDIFRKQKTVQNTFRTSKTKSNIAELSMAVKSAARAKTTQSQNITKNKEEKASEGKGER 552
Query: 296 RKAT*GSRMTTNS 258
+K T T+S
Sbjct: 553 KKNTSRPSSVTSS 565
>SB_1289| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3)
Length = 405
Score = 28.7 bits (61), Expect = 4.3
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Frame = +1
Query: 346 SVVDSPLAAAAV*ASEVMLDSVADMRVDTLVLLLYRNTSMFTYLPQNQLSKDFLDPCCGS 525
S D P A A++V+ S + + + Y + + T + L + C
Sbjct: 147 SSCDPPDAIGVSFAADVIRRSRQFILIVRECVTSYTTSLLLTNEQHSTLRDALIRLCVQM 206
Query: 526 TP---ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 642
P +TL + H NS+H+Y + PT R T I G
Sbjct: 207 RPLDDQTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 248
>SB_37802| Best HMM Match : RnaseH (HMM E-Value=0.69)
Length = 756
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 532 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 642
+TL + H+ NS+H+Y + PT R T I G
Sbjct: 563 QTLIEKQHEQRNSNHAYSEKSKAPTADFRPSTAITVG 599
>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1505
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 532 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 642
+TL + H NS+H+Y + PT R T I G
Sbjct: 1312 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 1348
>SB_52987| Best HMM Match : RBM1CTR (HMM E-Value=7)
Length = 247
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 532 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 642
+TL + H NS+H+Y + PT R T I G
Sbjct: 54 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 90
>SB_24005| Best HMM Match : TFIIB (HMM E-Value=0.0014)
Length = 751
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 545 SCNVSGVEPQQGSRKSLLNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAA 366
S ++ PQ S + L ++W R ID+ L S R + + + + A
Sbjct: 364 SSKLNRARPQ--SFAAALTYYWVRLKGIDITLKNFSERAGPSELTVDMNSLIKMENRTAE 421
Query: 365 KGESTTETESIRRVSAAKGNAASRKA 288
+ ES T ++ ++AA N A R+A
Sbjct: 422 QLESLT-VRDLKALAAADLNGAMREA 446
>SB_23695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 373
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 532 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 642
+TL + H NS+H+Y + PT R T I G
Sbjct: 180 QTLIEKQHNQRNSNHAYSEKSKAPTADFRPSTAITVG 216
>SB_59606| Best HMM Match : rve (HMM E-Value=0.00032)
Length = 404
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 532 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 642
+TL + H NS+H+Y + PT R T I G
Sbjct: 211 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 247
>SB_58483| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3)
Length = 134
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 532 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 642
+TL + H NS+H+Y + PT R T I G
Sbjct: 54 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 90
>SB_56242| Best HMM Match : Sigma54_activat (HMM E-Value=1.2)
Length = 395
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -3
Query: 545 SCNVSGVEPQQGSRKSLLNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAA 366
S ++ PQ S + L ++W R ID+ L S R + + + + A
Sbjct: 107 SSKLNRARPQ--SFAAALTYYWVRLKGIDITLKNFSERAGPSELTVDMNSLIKMENRTAE 164
Query: 365 KGESTTETESIRRVSAAKGNAASRKA 288
+ ES T ++ ++AA N A R+A
Sbjct: 165 QLESLT-VRDLKALAAADLNGAMREA 189
>SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 532 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 642
+TL + H NS+H+Y + PT R T I G
Sbjct: 1042 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 1078
>SB_38271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 532 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 642
+TL + H NS+H+Y + PT R T I G
Sbjct: 399 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 435
>SB_30310| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 990
Score = 27.9 bits (59), Expect = 7.5
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +2
Query: 206 VTQEASALPLSAADTERCYWWSFWIPR 286
+T +A+ P + D + + W FW P+
Sbjct: 903 ITSQATLSPYTPEDVDEQFLWEFWAPK 929
>SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59)
Length = 810
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 532 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 642
+TL + H NS+H+Y + PT R T I G
Sbjct: 617 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 653
>SB_15193| Best HMM Match : rve (HMM E-Value=0.00021)
Length = 544
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 532 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 642
+TL + H NS+H+Y + PT R T I G
Sbjct: 464 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 500
>SB_14783| Best HMM Match : rve (HMM E-Value=0.00014)
Length = 496
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 532 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 642
+TL + H NS+H+Y + PT R T I G
Sbjct: 353 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 389
>SB_9972| Best HMM Match : rve (HMM E-Value=0.16)
Length = 514
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 532 ETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICAG 642
+TL + H NS+H+Y + PT R T I G
Sbjct: 321 QTLIEKQHDQRNSNHAYSEKSKAPTADFRPSTAITVG 357
>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 385 ASEVMLDSVADMRVDTLVLLLYRNTSMFTYLPQNQLSK 498
A +V + D++V L LL NTSMF+ QN +SK
Sbjct: 266 ARKVFTNKTQDIKVSKLTRLLVANTSMFS---QNLVSK 300
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,166,494
Number of Sequences: 59808
Number of extensions: 269231
Number of successful extensions: 1088
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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