Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0835
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   5.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.9  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   7.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.8  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 404 SSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 288
           ++ +S A  AAAA   +T   +S R  ++  GN A   A
Sbjct: 125 TAASSAALAAAAAVDAATAGDKSCRYTASLAGNVAPASA 163


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 445 LYRNTSMFTYLPQNQLSKDFLDPCCGSTPETLQDHLHQGPNSSHS 579
           L  N  +  Y+P+ +   D  D   G+  ET  +  HQ   SS S
Sbjct: 275 LLMNDILRPYVPEFKGVLDVKDVEEGNVEETNSEETHQKDGSSDS 319


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 445 LYRNTSMFTYLPQNQLSKDFLDPCCGSTPETLQDHLHQGPNSSHS 579
           L  N  +  Y+P+ +   D  D   G+  ET  +  HQ   SS S
Sbjct: 190 LLMNDILRPYVPEFKGVLDVKDVEEGNVEETNSEETHQKDGSSDS 234


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 445 LYRNTSMFTYLPQNQLSKDFLDPCCGSTPETLQDHLHQGPNSSHS 579
           L  N  +  Y+P+ +   D  D   G+  ET  +  HQ   SS S
Sbjct: 509 LLMNDILRPYVPEFKGVLDVKDVEEGNVEETNSEETHQKDGSSDS 553


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
 Frame = +3

Query: 468 HVPPPEPVEQRLPRSLLW--LHP 530
           H+P   P+   + R+L W   HP
Sbjct: 102 HIPTAPPIPPEIQRALEWNAAHP 124


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 441 PLVQKHIYVH 470
           PL+QKH+ +H
Sbjct: 317 PLIQKHLKIH 326


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 547 HLHQGPNSSHSYCPHNSYP 603
           H HQ P+ +HS    +  P
Sbjct: 630 HFHQSPSQNHSSAVPDQMP 648


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,893
Number of Sequences: 438
Number of extensions: 2489
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)