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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0835
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23230.1 68414.m02906 expressed protein                             34   0.071
At5g23850.1 68418.m02800 expressed protein                             31   0.66 
At5g28120.1 68418.m03396 hypothetical protein                          30   1.2  
At3g30816.1 68416.m03949 hypothetical protein                          30   1.5  
At2g06860.1 68415.m00768 Ulp1 protease family protein contains P...    30   1.5  
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)...    29   2.0  
At4g05300.1 68417.m00803 hypothetical protein                          29   3.5  
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ...    28   4.7  
At5g28110.1 68418.m03395 hypothetical protein                          28   6.1  
At4g21900.1 68417.m03166 MATE efflux family protein similar to r...    28   6.1  
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops...    28   6.1  
At5g39080.1 68418.m04728 transferase family protein similar to a...    27   8.1  
At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ...    27   8.1  

>At1g23230.1 68414.m02906 expressed protein
          Length = 1615

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = -3

Query: 473 YVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 321
           Y+N D FL      + + +SA E+S++   Q AAA  G S T ++S+  VS
Sbjct: 126 YINWDTFL----PSLLSSVSAAEASLSQGVQAAAATAGSSATSSQSVVPVS 172


>At5g23850.1 68418.m02800 expressed protein
          Length = 542

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +1

Query: 424 VDTLVLLLYRNTSMFTYLPQNQ-LSKDFLDPCCGSTPETLQDH-LHQGPNSSHSYCPHNS 597
           +DT VLL  +  +  T   Q Q ++  +  P    T     +  LH   N + + CP N 
Sbjct: 60  LDTTVLLEKKAATTTTTKTQTQTITPKYPRPTTVITQSPKPEFTLHCSANETTASCPSNK 119

Query: 598 YPTTKRRED 624
           YPTT   ED
Sbjct: 120 YPTTTSFED 128


>At5g28120.1 68418.m03396 hypothetical protein
          Length = 506

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -3

Query: 446 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 294
           ++S R STRISA+E +  S        KGES T+    RR++  K +  +R
Sbjct: 342 EKSVRGSTRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391


>At3g30816.1 68416.m03949 hypothetical protein
          Length = 342

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 446 KRSTRVSTRISATESSITSEAQTAAAAKGESTTE--TESIRRVSAAKGNAASRK 291
           K+S R STRISA+E +  S        KGEST    T  I      +GN  +++
Sbjct: 179 KKSVRGSTRISASEHTQGSPMDAILPIKGESTKNGVTRWITNGKVHRGNRWTKR 232


>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain
          Length = 938

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 443  RSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 291
            +S R STRISA+E +  S        KGEST     E+ RR    KG++   +
Sbjct: 843  KSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDRRSVRPKGDSTDNQ 895


>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
           family protein low similarity to Swift [Xenopus laevis]
           GI:14164561; contains Pfam profiles PF00583:
           acetyltransferase, GNAT family, PF00533: BRCA1 C
           Terminus (BRCT) domain
          Length = 991

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 502 FLDPCCGSTPETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRI 633
           FL    G +   +QDHL   PN +H +  + +YP  K  ++  I
Sbjct: 865 FLTYANGKSAARIQDHLR--PNGAHRWHNYKTYPNIKELDEAAI 906


>At4g05300.1 68417.m00803 hypothetical protein
          Length = 387

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 446 KRSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 291
           ++S R STRISA+E +  S        KGEST     E+ +R    KG++   +
Sbjct: 301 EKSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDQRSVRPKGDSTDNQ 354


>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 714

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = -3

Query: 539 NVSGVEPQQGSRKSLLNWFWGRYVNIDVFLYKRSTRVSTR-ISATESSITSEAQTAAAAK 363
           NV+G +  QG++K +L + W + +   +    +S R  TR    T+S I S A       
Sbjct: 473 NVAGNDIVQGNKKLILGFLW-QLMRTHMLQLLKSLRSRTRGKDMTDSEIISWANRKVRIM 531

Query: 362 GESTTETESIRRVSAAKG 309
           G   ++ ES +  S + G
Sbjct: 532 GRK-SQIESFKDKSLSSG 548


>At5g28110.1 68418.m03395 hypothetical protein
          Length = 493

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -3

Query: 446 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 294
           ++S R S RISA+E +  S        KGES T+    RR++  K +  +R
Sbjct: 342 EKSVRGSIRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391


>At4g21900.1 68417.m03166 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           MatE
          Length = 1094

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = -3

Query: 431 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT 285
           VS+ IS  ESS+T+ A+  AAAKG+     + ++ + A  G +  R  T
Sbjct: 576 VSSGISPNESSVTAVAR-LAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 623


>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
           thaliana, EMBL:AC007020
          Length = 745

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = -3

Query: 494 LNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 321
           LN ++G    ID+    RST + T+ S   S   SEA      + ++TTE ESI +++
Sbjct: 689 LNSYFGTQQWIDL---ARSTGLQTQKSIPASKEISEALEEPTVECDTTTEEESIDKLN 743


>At5g39080.1 68418.m04728 transferase family protein similar to
           anthocyanin 5-aromatic acyltransferase from Gentiana
           triflora GI:4185599, malonyl CoA:anthocyanin
           5-O-glucoside-6'''-O-malonyltransferase from Perilla
           frutescens GI:17980232, Salvia splendens GI:17980234;
           contains Pfam profile PF02458 transferase family
          Length = 463

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = +1

Query: 76  VSSKRISLVSSKH-KMRAFV-----VLACVAMAYG-RPEPPVGYSYS 195
           VSS   S  SSK  ++  FV     VL C+  A G  P  PVGY++S
Sbjct: 271 VSSSSSSTSSSKELRLSTFVIVYSYVLVCIIRARGGEPHRPVGYAFS 317


>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893, fimbrin [Schizosaccharomyces pombe]
           GI:3057144; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 687

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = -3

Query: 539 NVSGVEPQQGSRKSLLNWFWG--RYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAA 366
           NV+G +  QG++K LL + W   RY  + +    RS      I  T++ I + A      
Sbjct: 472 NVAGNDIVQGNKKLLLAFLWQLMRYTMLQLLRNLRSHSQGKEI--TDADILNWA-NRKVK 528

Query: 365 KGESTTETESIRRVSAAKG 309
           +G  T++ +S R  + + G
Sbjct: 529 RGGRTSQADSFRDKNLSSG 547


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,284,516
Number of Sequences: 28952
Number of extensions: 190677
Number of successful extensions: 683
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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