Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0835
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23230.1 68414.m02906 expressed protein 34 0.071
At5g23850.1 68418.m02800 expressed protein 31 0.66
At5g28120.1 68418.m03396 hypothetical protein 30 1.2
At3g30816.1 68416.m03949 hypothetical protein 30 1.5
At2g06860.1 68415.m00768 Ulp1 protease family protein contains P... 30 1.5
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)... 29 2.0
At4g05300.1 68417.m00803 hypothetical protein 29 3.5
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ... 28 4.7
At5g28110.1 68418.m03395 hypothetical protein 28 6.1
At4g21900.1 68417.m03166 MATE efflux family protein similar to r... 28 6.1
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops... 28 6.1
At5g39080.1 68418.m04728 transferase family protein similar to a... 27 8.1
At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ... 27 8.1
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 34.3 bits (75), Expect = 0.071
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = -3
Query: 473 YVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 321
Y+N D FL + + +SA E+S++ Q AAA G S T ++S+ VS
Sbjct: 126 YINWDTFL----PSLLSSVSAAEASLSQGVQAAAATAGSSATSSQSVVPVS 172
>At5g23850.1 68418.m02800 expressed protein
Length = 542
Score = 31.1 bits (67), Expect = 0.66
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +1
Query: 424 VDTLVLLLYRNTSMFTYLPQNQ-LSKDFLDPCCGSTPETLQDH-LHQGPNSSHSYCPHNS 597
+DT VLL + + T Q Q ++ + P T + LH N + + CP N
Sbjct: 60 LDTTVLLEKKAATTTTTKTQTQTITPKYPRPTTVITQSPKPEFTLHCSANETTASCPSNK 119
Query: 598 YPTTKRRED 624
YPTT ED
Sbjct: 120 YPTTTSFED 128
>At5g28120.1 68418.m03396 hypothetical protein
Length = 506
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -3
Query: 446 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 294
++S R STRISA+E + S KGES T+ RR++ K + +R
Sbjct: 342 EKSVRGSTRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391
>At3g30816.1 68416.m03949 hypothetical protein
Length = 342
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 446 KRSTRVSTRISATESSITSEAQTAAAAKGESTTE--TESIRRVSAAKGNAASRK 291
K+S R STRISA+E + S KGEST T I +GN +++
Sbjct: 179 KKSVRGSTRISASEHTQGSPMDAILPIKGESTKNGVTRWITNGKVHRGNRWTKR 232
>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 938
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 443 RSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 291
+S R STRISA+E + S KGEST E+ RR KG++ +
Sbjct: 843 KSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDRRSVRPKGDSTDNQ 895
>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
family protein low similarity to Swift [Xenopus laevis]
GI:14164561; contains Pfam profiles PF00583:
acetyltransferase, GNAT family, PF00533: BRCA1 C
Terminus (BRCT) domain
Length = 991
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 502 FLDPCCGSTPETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRI 633
FL G + +QDHL PN +H + + +YP K ++ I
Sbjct: 865 FLTYANGKSAARIQDHLR--PNGAHRWHNYKTYPNIKELDEAAI 906
>At4g05300.1 68417.m00803 hypothetical protein
Length = 387
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -3
Query: 446 KRSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 291
++S R STRISA+E + S KGEST E+ +R KG++ +
Sbjct: 301 EKSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDQRSVRPKGDSTDNQ 354
>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 714
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -3
Query: 539 NVSGVEPQQGSRKSLLNWFWGRYVNIDVFLYKRSTRVSTR-ISATESSITSEAQTAAAAK 363
NV+G + QG++K +L + W + + + +S R TR T+S I S A
Sbjct: 473 NVAGNDIVQGNKKLILGFLW-QLMRTHMLQLLKSLRSRTRGKDMTDSEIISWANRKVRIM 531
Query: 362 GESTTETESIRRVSAAKG 309
G ++ ES + S + G
Sbjct: 532 GRK-SQIESFKDKSLSSG 548
>At5g28110.1 68418.m03395 hypothetical protein
Length = 493
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -3
Query: 446 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 294
++S R S RISA+E + S KGES T+ RR++ K + +R
Sbjct: 342 EKSVRGSIRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391
>At4g21900.1 68417.m03166 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
MatE
Length = 1094
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -3
Query: 431 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT 285
VS+ IS ESS+T+ A+ AAAKG+ + ++ + A G + R T
Sbjct: 576 VSSGISPNESSVTAVAR-LAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 623
>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
thaliana, EMBL:AC007020
Length = 745
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = -3
Query: 494 LNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 321
LN ++G ID+ RST + T+ S S SEA + ++TTE ESI +++
Sbjct: 689 LNSYFGTQQWIDL---ARSTGLQTQKSIPASKEISEALEEPTVECDTTTEEESIDKLN 743
>At5g39080.1 68418.m04728 transferase family protein similar to
anthocyanin 5-aromatic acyltransferase from Gentiana
triflora GI:4185599, malonyl CoA:anthocyanin
5-O-glucoside-6'''-O-malonyltransferase from Perilla
frutescens GI:17980232, Salvia splendens GI:17980234;
contains Pfam profile PF02458 transferase family
Length = 463
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Frame = +1
Query: 76 VSSKRISLVSSKH-KMRAFV-----VLACVAMAYG-RPEPPVGYSYS 195
VSS S SSK ++ FV VL C+ A G P PVGY++S
Sbjct: 271 VSSSSSSTSSSKELRLSTFVIVYSYVLVCIIRARGGEPHRPVGYAFS 317
>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893, fimbrin [Schizosaccharomyces pombe]
GI:3057144; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 687
Score = 27.5 bits (58), Expect = 8.1
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = -3
Query: 539 NVSGVEPQQGSRKSLLNWFWG--RYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAA 366
NV+G + QG++K LL + W RY + + RS I T++ I + A
Sbjct: 472 NVAGNDIVQGNKKLLLAFLWQLMRYTMLQLLRNLRSHSQGKEI--TDADILNWA-NRKVK 528
Query: 365 KGESTTETESIRRVSAAKG 309
+G T++ +S R + + G
Sbjct: 529 RGGRTSQADSFRDKNLSSG 547
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,284,516
Number of Sequences: 28952
Number of extensions: 190677
Number of successful extensions: 683
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -