BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0835 (649 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g23230.1 68414.m02906 expressed protein 34 0.071 At5g23850.1 68418.m02800 expressed protein 31 0.66 At5g28120.1 68418.m03396 hypothetical protein 30 1.2 At3g30816.1 68416.m03949 hypothetical protein 30 1.5 At2g06860.1 68415.m00768 Ulp1 protease family protein contains P... 30 1.5 At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)... 29 2.0 At4g05300.1 68417.m00803 hypothetical protein 29 3.5 At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ... 28 4.7 At5g28110.1 68418.m03395 hypothetical protein 28 6.1 At4g21900.1 68417.m03166 MATE efflux family protein similar to r... 28 6.1 At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops... 28 6.1 At5g39080.1 68418.m04728 transferase family protein similar to a... 27 8.1 At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ... 27 8.1 >At1g23230.1 68414.m02906 expressed protein Length = 1615 Score = 34.3 bits (75), Expect = 0.071 Identities = 19/51 (37%), Positives = 29/51 (56%) Frame = -3 Query: 473 YVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 321 Y+N D FL + + +SA E+S++ Q AAA G S T ++S+ VS Sbjct: 126 YINWDTFL----PSLLSSVSAAEASLSQGVQAAAATAGSSATSSQSVVPVS 172 >At5g23850.1 68418.m02800 expressed protein Length = 542 Score = 31.1 bits (67), Expect = 0.66 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Frame = +1 Query: 424 VDTLVLLLYRNTSMFTYLPQNQ-LSKDFLDPCCGSTPETLQDH-LHQGPNSSHSYCPHNS 597 +DT VLL + + T Q Q ++ + P T + LH N + + CP N Sbjct: 60 LDTTVLLEKKAATTTTTKTQTQTITPKYPRPTTVITQSPKPEFTLHCSANETTASCPSNK 119 Query: 598 YPTTKRRED 624 YPTT ED Sbjct: 120 YPTTTSFED 128 >At5g28120.1 68418.m03396 hypothetical protein Length = 506 Score = 30.3 bits (65), Expect = 1.2 Identities = 19/51 (37%), Positives = 28/51 (54%) Frame = -3 Query: 446 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 294 ++S R STRISA+E + S KGES T+ RR++ K + +R Sbjct: 342 EKSVRGSTRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391 >At3g30816.1 68416.m03949 hypothetical protein Length = 342 Score = 29.9 bits (64), Expect = 1.5 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = -3 Query: 446 KRSTRVSTRISATESSITSEAQTAAAAKGESTTE--TESIRRVSAAKGNAASRK 291 K+S R STRISA+E + S KGEST T I +GN +++ Sbjct: 179 KKSVRGSTRISASEHTQGSPMDAILPIKGESTKNGVTRWITNGKVHRGNRWTKR 232 >At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain Length = 938 Score = 29.9 bits (64), Expect = 1.5 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = -3 Query: 443 RSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 291 +S R STRISA+E + S KGEST E+ RR KG++ + Sbjct: 843 KSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDRRSVRPKGDSTDNQ 895 >At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT) family protein low similarity to Swift [Xenopus laevis] GI:14164561; contains Pfam profiles PF00583: acetyltransferase, GNAT family, PF00533: BRCA1 C Terminus (BRCT) domain Length = 991 Score = 29.5 bits (63), Expect = 2.0 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +1 Query: 502 FLDPCCGSTPETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRI 633 FL G + +QDHL PN +H + + +YP K ++ I Sbjct: 865 FLTYANGKSAARIQDHLR--PNGAHRWHNYKTYPNIKELDEAAI 906 >At4g05300.1 68417.m00803 hypothetical protein Length = 387 Score = 28.7 bits (61), Expect = 3.5 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = -3 Query: 446 KRSTRVSTRISATESSITSEAQTAAAAKGESTT--ETESIRRVSAAKGNAASRK 291 ++S R STRISA+E + S KGEST E+ +R KG++ + Sbjct: 301 EKSVRGSTRISASEHTQGSPMDAILPVKGESTKNGHGETDQRSVRPKGDSTDNQ 354 >At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to fimbrin-like protein (ATFIM1) [Arabidopsis thaliana] GI:2905893; contains Pfam profile PF00307: Calponin homology (CH) domain Length = 714 Score = 28.3 bits (60), Expect = 4.7 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Frame = -3 Query: 539 NVSGVEPQQGSRKSLLNWFWGRYVNIDVFLYKRSTRVSTR-ISATESSITSEAQTAAAAK 363 NV+G + QG++K +L + W + + + +S R TR T+S I S A Sbjct: 473 NVAGNDIVQGNKKLILGFLW-QLMRTHMLQLLKSLRSRTRGKDMTDSEIISWANRKVRIM 531 Query: 362 GESTTETESIRRVSAAKG 309 G ++ ES + S + G Sbjct: 532 GRK-SQIESFKDKSLSSG 548 >At5g28110.1 68418.m03395 hypothetical protein Length = 493 Score = 27.9 bits (59), Expect = 6.1 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = -3 Query: 446 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASR 294 ++S R S RISA+E + S KGES T+ RR++ K + +R Sbjct: 342 EKSVRGSIRISASEHTQGSPIDAILPIKGES-TKNGVTRRITNGKVHGGNR 391 >At4g21900.1 68417.m03166 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: MatE Length = 1094 Score = 27.9 bits (59), Expect = 6.1 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = -3 Query: 431 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT 285 VS+ IS ESS+T+ A+ AAAKG+ + ++ + A G + R T Sbjct: 576 VSSGISPNESSVTAVAR-LAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 623 >At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis thaliana, EMBL:AC007020 Length = 745 Score = 27.9 bits (59), Expect = 6.1 Identities = 20/58 (34%), Positives = 31/58 (53%) Frame = -3 Query: 494 LNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVS 321 LN ++G ID+ RST + T+ S S SEA + ++TTE ESI +++ Sbjct: 689 LNSYFGTQQWIDL---ARSTGLQTQKSIPASKEISEALEEPTVECDTTTEEESIDKLN 743 >At5g39080.1 68418.m04728 transferase family protein similar to anthocyanin 5-aromatic acyltransferase from Gentiana triflora GI:4185599, malonyl CoA:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase from Perilla frutescens GI:17980232, Salvia splendens GI:17980234; contains Pfam profile PF02458 transferase family Length = 463 Score = 27.5 bits (58), Expect = 8.1 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 7/47 (14%) Frame = +1 Query: 76 VSSKRISLVSSKH-KMRAFV-----VLACVAMAYG-RPEPPVGYSYS 195 VSS S SSK ++ FV VL C+ A G P PVGY++S Sbjct: 271 VSSSSSSTSSSKELRLSTFVIVYSYVLVCIIRARGGEPHRPVGYAFS 317 >At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to fimbrin-like protein (ATFIM1) [Arabidopsis thaliana] GI:2905893, fimbrin [Schizosaccharomyces pombe] GI:3057144; contains Pfam profile PF00307: Calponin homology (CH) domain Length = 687 Score = 27.5 bits (58), Expect = 8.1 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Frame = -3 Query: 539 NVSGVEPQQGSRKSLLNWFWG--RYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAA 366 NV+G + QG++K LL + W RY + + RS I T++ I + A Sbjct: 472 NVAGNDIVQGNKKLLLAFLWQLMRYTMLQLLRNLRSHSQGKEI--TDADILNWA-NRKVK 528 Query: 365 KGESTTETESIRRVSAAKG 309 +G T++ +S R + + G Sbjct: 529 RGGRTSQADSFRDKNLSSG 547 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,284,516 Number of Sequences: 28952 Number of extensions: 190677 Number of successful extensions: 683 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 666 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 683 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1344285648 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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