Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0834
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    25   0.59 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   3.2  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    23   3.2  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   4.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   5.5  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   7.3  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   9.6  

>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +1

Query: 202 QWCNKTSSRHCEHKTNDILYVPVFFCENSHHNCLSRFYFA-VVERQNVSVVTYRTYL 369
           QW  K  S H    TN+I     F   NS H    RF+     +   +   T+RTY+
Sbjct: 66  QWMQKVVSFHKLKLTNNISDKHGFTILNSMHKYQPRFHLVRANDILKLPYSTFRTYV 122


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 681 SSSRLNIEL*KSHSNF*FYSSRLCDFS 601
           + S LN  + KSHSN   YS R C ++
Sbjct: 270 NKSMLNSHM-KSHSNVYRYSCRDCSYA 295


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 681 SSSRLNIEL*KSHSNF*FYSSRLCDFS 601
           + S LN  + KSHSN   YS R C ++
Sbjct: 28  NKSMLNSHM-KSHSNVYRYSCRDCSYA 53


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 337 FVAQPLRNRNEKDNYDDYFHK 275
           +V + LR R ++ +Y D  HK
Sbjct: 463 YVPKSLRGRKDEADYKDKLHK 483


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 430 YCQKYYGT**CNY 392
           YCQK+Y    C+Y
Sbjct: 573 YCQKHYANGLCDY 585


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 274 FCENSHHNCL 303
           FC+ + HNCL
Sbjct: 63  FCQRNGHNCL 72


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 367 LRMKQYVLYNYIIRYHNIF 423
           L +K  V  N +++Y NIF
Sbjct: 7   LSLKDIVFINPLVKYLNIF 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,036
Number of Sequences: 336
Number of extensions: 3972
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)