Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0834
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58118| Best HMM Match : Somatomedin_B (HMM E-Value=3.7)             31   1.2  
SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)     28   6.3  
SB_6256| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_58118| Best HMM Match : Somatomedin_B (HMM E-Value=3.7)
          Length = 306

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
 Frame = +1

Query: 205 WCNKTSSRHCEHKTNDILY----VPVFFCENSHHNCLSR------FYFAVVERQNVSVVT 354
           WCN+TSS  C+ +    L+    VP   C         R      F   VV R++ + V 
Sbjct: 117 WCNRTSSLCCKTERARALHRDAGVPEGPCGLPEIQQFQRYLGERGFELNVVSREHANTVI 176

Query: 355 YRTYLRMKQYVLYNYIIRYHNIFDNN 432
           Y   L   +Y LY Y ++ H  + N+
Sbjct: 177 YSGNLPAPEYRLYLYYVKGHFDYINS 202


>SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)
          Length = 915

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 638 ISDFTAHDCVISVIYVDFNSFLMAAPWHSNYKTD 537
           + +FTA    ++V ++DF+  L  A    N+K D
Sbjct: 289 VENFTASCAAVTVFHIDFSKILGHAQMFGNFKRD 322


>SB_6256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +1

Query: 268 VFFCENSH--HNCLSRFYFAVVERQNVSVVTYR---TYLRMKQYVLYNYIIRY 411
           V+ C   +  + C++++   V  RQ V  V  R    Y+ ++QYV+Y  I+R+
Sbjct: 354 VYVCVGQYVVYVCIAKYVVYVRVRQYVVYVRVRQYVVYVCVRQYVVYTLILRF 406


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,584,844
Number of Sequences: 59808
Number of extensions: 366532
Number of successful extensions: 713
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)