Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0834
         (695 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065948-1|BAC06161.1|  304|Homo sapiens seven transmembrane hel...    34   0.56 
AB065943-1|BAC06157.1|  304|Homo sapiens seven transmembrane hel...    34   0.56 
AB065947-1|BAC06160.1|  310|Homo sapiens seven transmembrane hel...    33   1.3  

>AB065948-1|BAC06161.1|  304|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 304

 Score = 33.9 bits (74), Expect = 0.56
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +1

Query: 286 SHHNCLSRFYF----AVVERQNVSVVTYRTYLRMKQYVLYNYIIRYHNIF 423
           S+  C+++ YF    A+ E   ++V  Y  Y+ +   +LYN I+ YH+ F
Sbjct: 106 SYPECMTQLYFFLIFAIAECHMLAVTAYDRYVAICSPLLYNVIMSYHHCF 155


>AB065943-1|BAC06157.1|  304|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 304

 Score = 33.9 bits (74), Expect = 0.56
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +1

Query: 286 SHHNCLSRFYF----AVVERQNVSVVTYRTYLRMKQYVLYNYIIRYHNIF 423
           S+  C+++ YF    A+ E   ++V  Y  Y+ +   +LYN I+ YH+ F
Sbjct: 106 SYPECMTQLYFFLIFAIAECHMLAVTAYDRYVAICSPLLYNVIMSYHHCF 155


>AB065947-1|BAC06160.1|  310|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 310

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +1

Query: 286 SHHNCLSRFY----FAVVERQNVSVVTYRTYLRMKQYVLYNYIIRYHNIF 423
           S+  C+++ Y    FA+ E   ++ + Y  Y+ +   +LYN I+ YH+ F
Sbjct: 93  SYPECMAQLYLFSIFAIAECHMLAAMAYDCYVAICSPLLYNVIMSYHHCF 142


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,031,702
Number of Sequences: 237096
Number of extensions: 1678197
Number of successful extensions: 2709
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2708
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)