Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0834
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006743-1|AAF60503.1|  255|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF016436-4|AAC25895.2|  331|Caenorhabditis elegans Serpentine re...    27   9.7  

>AC006743-1|AAF60503.1|  255|Caenorhabditis elegans Hypothetical
           protein Y38C1BA.1 protein.
          Length = 255

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 158 IWFSYRCMYIFYFQQKRFYVCDF 90
           +WF Y+C++I +   + F  C+F
Sbjct: 57  LWFIYQCIHIIFIHTRIFQNCNF 79


>Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical
           protein B0462.1 protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 13/96 (13%)
 Frame = +1

Query: 235 EHKTNDILYVPVFFCENSHHNCLSRFYFAV------------VERQNVSVVTYRTYLRMK 378
           E  TND+ Y+ VF C++      S + + +            ++R    V  YR+ + + 
Sbjct: 368 EFLTNDVFYIVVFDCKSFFTKLFSPYAYVISCDSNSGNVLKSIDRGECHVWIYRS-VGLN 426

Query: 379 QYVLY-NYIIRYHNIFDNNGTPLLIWIQQIFQPNPF 483
            Y  Y   +I +   F+ +   L  WIQ+    +PF
Sbjct: 427 TYENYTTRMIDFMRTFEPSSQILQTWIQKNCNTSPF 462


>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical protein
            F59F3.5 protein.
          Length = 1199

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 298  NYDDYFHKKKLEHIIYHLFCVHNGETKFYYTI 203
            N+  YF  K L+ I   L C  N + KF+Y +
Sbjct: 1160 NHIQYFASKLLQQIEKDLECEKNNQQKFHYWV 1191


>AF016436-4|AAC25895.2|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein39 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 598 FMLILIVF*WQPLGIQTIKLTFNVFYTIIKGSI 500
           F LIL+ F ++ L IQ   LT N F+  + GSI
Sbjct: 103 FALILVHFIYRYLAIQNSSLTRNNFHWYMTGSI 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,663,277
Number of Sequences: 27780
Number of extensions: 311124
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)