Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0834
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative St...    30   1.3  
At1g54920.2 68414.m06269 expressed protein                             28   6.8  
At1g54920.1 68414.m06270 expressed protein                             28   6.8  

>At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative
           Strong similarity to beta-keto-Coa synthase gb|U37088
           from Simmondsia chinensis, GI:4091810
          Length = 528

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
 Frame = +1

Query: 247 NDILYVPVFFCENSHHNCLSRFYFAVVERQNVSVVTYRTYLRMKQYVLYNYIIRYHNIFD 426
           N +L V + + +  +H  +S   + ++    +   T  ++      +LYN+++++H +  
Sbjct: 24  NFLLSVRLKYVKLGYHYLISNAVYILILPVGLLAATSSSFSLTDLTLLYNHLLKFHFLSS 83

Query: 427 NNGTPLLIWIQQI-FQPNP---FLIQFLVYFP 510
                LLI++  + F   P   FL+ F  Y P
Sbjct: 84  TLFAALLIFLTTLYFTTRPRRIFLLDFACYKP 115


>At1g54920.2 68414.m06269 expressed protein
          Length = 890

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 313 RNEKDNYDDYFHKKKLEHIIYHLFCVH 233
           R E ++Y D FHK K+E  +YH+   H
Sbjct: 568 RIEPNDYQDLFHKLKIE--LYHIALYH 592


>At1g54920.1 68414.m06270 expressed protein
          Length = 430

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 313 RNEKDNYDDYFHKKKLEHIIYHLFCVH 233
           R E ++Y D FHK K+E  +YH+   H
Sbjct: 232 RIEPNDYQDLFHKLKIE--LYHIALYH 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,087,856
Number of Sequences: 28952
Number of extensions: 259071
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)