Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0833
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   4.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.2  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    22   5.5  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    22   5.5  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   9.7  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +1

Query: 10  YQCHGGVETRWSPRLRLTWQLCSIRMGSSVI 102
           Y C    +  W  R  +TW   S+ M   V+
Sbjct: 188 YDCWATFQEPWGKRAYVTWYSISVFMVPLVV 218


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 210 QLHKAWGSSCSGVPKNDPINFICAFYG 290
           QLH    +  +G+P     N +CA  G
Sbjct: 33  QLHSPCATGSNGLPAGAGSNLLCASNG 59


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = +3

Query: 207 RQLHKAWGSSCSGVPKNDPINFICAFYGCLQAGIVPV 317
           +Q  K +   C       P+ ++C F+G     +V V
Sbjct: 4   KQFLKLFKDPCDVYTAIHPLFYVCTFFGLAPYSLVRV 40


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = +3

Query: 207 RQLHKAWGSSCSGVPKNDPINFICAFYGCLQAGIVPV 317
           +Q  K +   C       P+ ++C F+G     +V V
Sbjct: 4   KQFLKLFKDPCDVYTAIHPLFYVCTFFGLAPYSLVRV 40


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 577 LRR*RIRNGSYRYQGFNAGA 636
           L++ R+ NG Y Y+  + GA
Sbjct: 61  LKKQRLDNGDYPYENGHMGA 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,061
Number of Sequences: 336
Number of extensions: 3597
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)