Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0833
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    44   2e-05
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    31   0.16 
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   2.6  
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    26   6.0  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    26   6.0  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    25   7.9  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   7.9  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
 Frame = +3

Query: 48  SFKANMATVLDPNGKLSNSLTYGKLLSRSLKIAHALLNKTFTFKGRNGGPIERRQLHKAW 227
           S K     +LD  GK   S+T+ KL SR+ K+A  + +K+  F+      + R       
Sbjct: 175 SAKKTAFIILDNKGKEFTSITWEKLASRAEKVAQVIRDKSGLFRSDRVVLMYR------- 227

Query: 228 GSSCSGVPKNDPINFICAFYGCLQAGIVPVPIEVPLTRRDAGLQQVGFLLGSCGIQYALT 407
              C      + I+F+ + +GC  AG+V VPI      R     ++  +L +   + ALT
Sbjct: 228 --DC------EAIDFVVSLFGCFIAGVVAVPI-----NRFDDYNELSSILTTTSARLALT 274

Query: 408 SDACLKGLPKTSSGDVVSFRGWP-SLHWVSTEK 503
           +DA LK   +  +   +    WP ++ W  T +
Sbjct: 275 TDANLKAFQRDLNAKKLH---WPKNVEWWKTNE 304



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 267  NFICAFYGCLQAGIVPVPI 323
            +F+ A Y C   G++P+P+
Sbjct: 955  DFVYALYACFYLGLIPIPV 973


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 258 DPINFICAFYGCLQAGIVPVPIEV 329
           DP+ F+ + + C   G++P+P ++
Sbjct: 866 DPLEFLISIHSCFHLGVIPIPFQI 889



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 252 KNDPINFICAFYGCLQAGIVPVPI 323
           K++   +I + +GCL  GIV +P+
Sbjct: 160 KSEASEYIISIFGCLLLGIVVIPL 183


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +1

Query: 280 RSTDAYKLE*FQFRLKFHSLVATPAFSKSAFCSALVEYNMRSLQMRVLKAY 432
           RS DA+KL   Q     + + +   FS+    SALV+YNM  + + ++K Y
Sbjct: 335 RSPDAFKLA-LQSISNANQIPSFDVFSR--LMSALVKYNMTEMILPLVKQY 382


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 100 LLSFPFGSSTVAMLALN 50
           LLS P GSST+ +LA N
Sbjct: 447 LLSIPVGSSTINLLAFN 463


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 172 HSKAATGGPLSGDNSIKLGDRVALVYPKT 258
           H  A+ GG L G+  I L D   ++ PKT
Sbjct: 313 HPSASVGGILRGNLHINLLDSTVILCPKT 341


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 462 FRGWPSLHWVSTEKLPVRRATGSRLLVRLMNVQRTSNT 575
           F+G+PS ++ +T   PV  A  S ++ ++     T +T
Sbjct: 370 FKGYPSFYYPATLVAPVHSAVTSSIMYKVQFDDATMST 407


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 688 TMCSPSGVVAGHQKHPTV 635
           ++CSPSGV+ GH    T+
Sbjct: 302 SLCSPSGVLFGHNDIDTI 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,565
Number of Sequences: 5004
Number of extensions: 59381
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)