Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0833
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811...    36   0.023
08_02_0173 - 13749975-13750052,13751097-13751216,13752095-137523...    29   3.5  
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304...    29   4.7  
02_05_0162 + 26398252-26399886                                         28   6.2  
07_03_1775 + 29431106-29431193,29431290-29431329,29431620-294320...    28   8.2  
04_04_1163 - 31398565-31398654,31398729-31398812,31398893-313990...    28   8.2  

>04_04_0214 -
           23674270-23676858,23677574-23680843,23680941-23681119,
           23681200-23681559,23681645-23682086,23682199-23682332,
           23682479-23682680
          Length = 2391

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 264 INFICAFYGCLQAGIVPVPIEVPLTRRDAG 353
           + FI AF+GC++AG++PVP+  P   +  G
Sbjct: 540 LEFIDAFFGCIRAGVIPVPVLPPDPMQSGG 569


>08_02_0173 -
           13749975-13750052,13751097-13751216,13752095-13752348,
           13752353-13752651,13753091-13753197,13753293-13753431,
           13753863-13754030,13755367-13755476,13755830-13755934,
           13757398-13757499,13757546-13757671,13757843-13758055,
           13758133-13758195
          Length = 627

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 315 VPIEVPLTRRDAGLQQVGFLLGSCGIQYALTSDACLKGLPK-TSSGDVVSFRGWPSLHWV 491
           VPI +     D  L+ V     S  ++Y  T   CL  L K  ++G V+  R  P++H V
Sbjct: 329 VPIFLSCATPDEFLESVTKADASLSVKYLRTLVQCLSMLGKVAAAGAVICQRVRPTIHDV 388

Query: 492 STEKL 506
            T K+
Sbjct: 389 ITSKI 393


>08_01_0344 +
           3043824-3044123,3044260-3044314,3044810-3044985,
           3045083-3045283,3045383-3045642,3045909-3046222,
           3046399-3046622,3047046-3047398,3047709-3047826,
           3047875-3048133,3048252-3049729
          Length = 1245

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 393 QYALTS-DACLKGLPKTSSGDVVSFRGWPSLHWVSTEKLPVRRATGSRLLVRLMNV 557
           QY L+  +A +KG+        V+F  W  + W+    +  R+ATG   +  +M++
Sbjct: 272 QYKLSKKEAVIKGIG-LGLFQAVTFCSWALMVWIGAVAVTSRKATGGGTIAAIMSI 326


>02_05_0162 + 26398252-26399886
          Length = 544

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 304 PACRHP*NAHMKLIGSFLGTPEQLDPQALWSCLR 203
           PACRH   A++ LI  F GT       A  S +R
Sbjct: 465 PACRHDLEAYLHLIDGFTGTGRPFRHDARRSVIR 498


>07_03_1775 +
           29431106-29431193,29431290-29431329,29431620-29432080,
           29432173-29432363,29432503-29432635,29432839-29433428
          Length = 500

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 421 RHASEVSAYCIPQEPSRKPTC*RPASRRVSGTSIG 317
           R   +V+ +CI  EPS++P   + A R    TS+G
Sbjct: 442 RALCDVARWCIEPEPSKRPLMSQVAGRMKEITSLG 476


>04_04_1163 -
           31398565-31398654,31398729-31398812,31398893-31399037,
           31399118-31399239,31399338-31399376,31399491-31399601,
           31399682-31399804,31399946-31400032,31400136-31400207,
           31400349-31400621,31400704-31400895,31400988-31401171,
           31401339-31401480,31401578-31401821,31401959-31402603,
           31403024-31403293
          Length = 940

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 483 HWVSTEKLPVRRATGSRLLV 542
           HWV+TE LP R   G+  LV
Sbjct: 479 HWVATESLPARDINGNPYLV 498


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,272,265
Number of Sequences: 37544
Number of extensions: 463915
Number of successful extensions: 1491
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)