Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0833
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.)               80   2e-15
SB_43290| Best HMM Match : AMP-binding (HMM E-Value=6.5e-16)           40   0.003
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.5  
SB_51021| Best HMM Match : Podocalyxin (HMM E-Value=3.3)               30   2.1  
SB_49729| Best HMM Match : Vps54 (HMM E-Value=3.7)                     29   3.6  
SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)                 29   3.6  
SB_10741| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.71)            29   3.6  
SB_20408| Best HMM Match : rve (HMM E-Value=0.0034)                    29   4.8  
SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)                         29   4.8  
SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45)               29   4.8  
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)                 29   4.8  
SB_23564| Best HMM Match : zf-CCHC (HMM E-Value=0.015)                 28   8.4  
SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10)                 28   8.4  
SB_8895| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1329

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 50/111 (45%), Positives = 67/111 (60%)
 Frame = +3

Query: 48   SFKANMATVLDPNGKLSNSLTYGKLLSRSLKIAHALLNKTFTFKGRNGGPIERRQLHKAW 227
            S K    TV+D +GK S  LTYGKLLSRS+KIA+ALLNK  + K   G  I       A 
Sbjct: 831  SSKQPCCTVVDSHGKASVVLTYGKLLSRSIKIAYALLNKVGSHK--EGTSI------MAG 882

Query: 228  GSSCSGVPKNDPINFICAFYGCLQAGIVPVPIEVPLTRRDAGLQQVGFLLG 380
                     +DPI F+ +FYGCL AG++PVP+E P + +D+ L + G ++G
Sbjct: 883  DRVALVYQVDDPIGFMTSFYGCLLAGVIPVPVEPP-SAKDSLLGRDGAVMG 932



 Score = 37.1 bits (82), Expect = 0.014
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +2

Query: 551  ECPAHIEHTSAADGSAMGVIVTRASMLAHCRMLLVACNYPRG 676
            E P+  +     DG+ MGV VTR SM  H + L  AC+Y  G
Sbjct: 915  EPPSAKDSLLGRDGAVMGVTVTRMSMALHSQTLTQACDYVEG 956


>SB_43290| Best HMM Match : AMP-binding (HMM E-Value=6.5e-16)
          Length = 980

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = +3

Query: 264 INFICAFYGCLQAGIVPVPIEVPLTRR-DAGLQQVGFLLGSCGIQYALTSDACLKGLPKT 440
           ++FI A +GCL AG++PVP+  P      + L  V  +      +   T  +  K L   
Sbjct: 388 VDFIVAVFGCLFAGLIPVPVRPPHANNISSTLPTVKMVTDVSKARAVFTLHSIAKILKSK 447

Query: 441 SSGDVVSFRGWPSLHWVSTEKLPVRR 518
            +  VV  + WP +  V T+  P R+
Sbjct: 448 EAIAVVDNKSWPMI--VETDDPPKRK 471


>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 27.9 bits (59), Expect(2) = 1.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 426 GLPKTSSGDVVSFRGWPSLHWVSTEKLPVRRATGSRLLV 542
           GLP+T  G      G    HW +TEKL  R A   R L+
Sbjct: 34  GLPRTKFGLPKRDLGHQERHWENTEKLSKRLAVQYRHLL 72



 Score = 21.0 bits (42), Expect(2) = 1.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 654 WPATTPEGEHMVCVL 698
           WPA T E  H++ V+
Sbjct: 73  WPAVTDENLHVIKVV 87


>SB_51021| Best HMM Match : Podocalyxin (HMM E-Value=3.3)
          Length = 525

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 540 VRLMNVQRTSNTPPPLTDPQ-WELSLPGLQCWRTVGC 647
           ++L +  R   +PPP T P  W LS P  Q +   GC
Sbjct: 454 LKLCSRHRAKYSPPPSTPPGFWNLSFPDTQEYMAKGC 490


>SB_49729| Best HMM Match : Vps54 (HMM E-Value=3.7)
          Length = 353

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 450 DVVSFRGWPSLHWVSTEKLPVRRATGSRLLVR--LMNVQRTSNTPPPLTDPQ 599
           D V    W +L  V    LP R+ TG R      LMN+ R ++  PP T P+
Sbjct: 146 DTVCQHKWRNLKEVLVPSLPERQ-TGQRNRTNKLLMNLHRVTSPEPPATRPK 196


>SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)
          Length = 1219

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +3

Query: 510 VRRATGSRLLVRLMNVQRTSNTPPPLTDPQWELSLPGLQCWRTVGCFWWPATTPEGEHM 686
           +RR  GSR+ V L N     +   P  D     S+     +  V CF  PA+ PEG  M
Sbjct: 26  LRRRGGSRMYVDLKN----PDNDEPTHDDDRPASVRDALVFLEVACFRSPASVPEGHTM 80


>SB_10741| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.71)
          Length = 281

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +3

Query: 111 YGKLLSRSLKIAHALLNKTFTFKGRNGGPIERRQLHKAWGSSCSGVPKNDPINFIC 278
           Y  LLS   +     + K  TFK RN GP+  +  +   G   S V   D    +C
Sbjct: 128 YAGLLSPQYQCVSGFVCKLVTFKWRNTGPVSPQYQYDVSGCVFSYVTSADMYILVC 183


>SB_20408| Best HMM Match : rve (HMM E-Value=0.0034)
          Length = 887

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -3

Query: 507 AVSRSTPNVGTANRETRPRHRMRSLVGL*DTHLK*AHIVFHKSRAESRLAE 355
           A++R     GTA+ +TR +H  R      D HLK  H  F      S++ E
Sbjct: 268 ALARHVNTAGTASADTRCQHEWRVCHPRVDVHLKACHF-FSNQLVASQMGE 317


>SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)
          Length = 893

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 450 DVVSFRGWPSLHWVSTEKLPVRRATGSRLLVRLMNVQRTSNTPPPLTDPQ 599
           D +++ G+  L  + T+ L    A+G+  L R  N  RT N P    DP+
Sbjct: 773 DTITYNGYRFLV-LRTDFLNTNNASGTAYLYRTRNDPRTRNDPRTRNDPR 821


>SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45)
          Length = 426

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = +1

Query: 202 SGDNSIKLG---DRVALVYPKTIRL---TSYARSTDAYKLE*FQFRLKFHSLVATPAFSK 363
           SGD S K+    D+    +P   RL   ++Y+ STD Y ++  +  ++  +L   P F K
Sbjct: 224 SGDKSCKIWNIEDKSLQTFPLVARLYCYSTYSISTDVYDIQYLEQVIQKQALARIPKFDK 283

Query: 364 S 366
           S
Sbjct: 284 S 284


>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
          Length = 867

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 142 LLTHCSTKHLHSKAATGGPLSGDNSIKLGDRVALVYPKTIRLTSYARS 285
           LLT  ST  L S     GP++G    +  D V  ++P+ +   SY RS
Sbjct: 7   LLTRFSTICLLSGRPVTGPIAGHTRSRHFDSVNSIHPRIVYSGSYLRS 54


>SB_23564| Best HMM Match : zf-CCHC (HMM E-Value=0.015)
          Length = 667

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 1   SICYQCHGGVETRWSPRLRLTWQLCSIRMGSSVIPLHMESS*AAH*KLLTHCSTKHL-HS 177
           ++C +  GG E +   R +   Q+       S  P H +SS  +    L   ++KHL H 
Sbjct: 262 AVCCKSEGGTEDKHRRRFKRIHQV-------SHEPEHEDSSSGSDGGYL-ELTSKHLSHV 313

Query: 178 KAATGGPLSGDNSIKLGDRVALVYP 252
           K  T G   G   ++LGD  A V P
Sbjct: 314 KIVTSGKPKGTVLVRLGDVDAQVEP 338


>SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2306

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 1   SICYQCHGGVETRWSPRLRLTWQLCSIRMGSSVIPLHMESS*AAH*KLLTHCSTKHL-HS 177
           ++C +  GG E +   R +   Q+       S  P H +SS  +    L   ++KHL H 
Sbjct: 319 AVCCKSEGGTEDKHRRRFKRIHQV-------SHEPEHEDSSSGSDSGYL-ELTSKHLSHV 370

Query: 178 KAATGGPLSGDNSIKLGDRVALVYP 252
           K  T G   G   ++LGD  A V P
Sbjct: 371 KIVTSGKPKGTVLVRLGDVDAQVEP 395


>SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10)
          Length = 1318

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 1   SICYQCHGGVETRWSPRLRLTWQLCSIRMGSSVIPLHMESS*AAH*KLLTHCSTKHL-HS 177
           ++C +  GG E +   R +   Q+       S  P H +SS  +    L   ++KHL H 
Sbjct: 539 AVCCKSEGGTEDKHRRRFKRIHQV-------SHEPEHEDSSSGSDSGYL-ELTSKHLSHV 590

Query: 178 KAATGGPLSGDNSIKLGDRVALVYP 252
           K  T G   G   ++LGD  A V P
Sbjct: 591 KIVTSGKPKGTVLVRLGDVDAQVEP 615


>SB_8895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/50 (22%), Positives = 25/50 (50%)
 Frame = +1

Query: 64  WQLCSIRMGSSVIPLHMESS*AAH*KLLTHCSTKHLHSKAATGGPLSGDN 213
           W LC + +G S+  ++ +++      + +HC  + +     + GP+ G N
Sbjct: 265 WGLCVLNVGDSLAFVYNKNNGVREITIGSHCEQRDMRCPGGSLGPVDGYN 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,299,562
Number of Sequences: 59808
Number of extensions: 490418
Number of successful extensions: 1422
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1420
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)