Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0833
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...   134   8e-32
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
           protein F28B3.1 protein.
          Length = 1539

 Score =  134 bits (323), Expect = 8e-32
 Identities = 71/165 (43%), Positives = 100/165 (60%), Gaps = 18/165 (10%)
 Frame = +3

Query: 66  ATVLDPNGKLSNSLTYGKLLSRSLKIAHALLNKTFTFKGRNGGPIERRQLHKAWGSSCSG 245
           A VLD + K S  LTYGKL SR+ K+A+ LL KT     ++G    +  + K        
Sbjct: 286 AMVLDQSAKPSTQLTYGKLHSRAGKVAYMLLTKTVQVN-KDGS---KNVMCKPGDRVALI 341

Query: 246 VPKNDPINFICAFYGCLQAGIVPVPIEVPLTRRDAGLQQVGFLLGSCGIQYALTSDACLK 425
            P   P++F+ AFYGCLQAG++PVP+E+P ++R+AG+ Q+GFLLG+CG++ ALTS++C K
Sbjct: 342 YPNTQPLHFLAAFYGCLQAGVIPVPVEMPSSKREAGIAQLGFLLGNCGVKVALTSESCYK 401

Query: 426 GLPKT------------------SSGDVVSFRGWPSLHWVSTEKL 506
           GLPK                   +S ++V FRGWP L W  TE +
Sbjct: 402 GLPKKVNTSSTFSAPSGSNSLTGTSSEIVDFRGWPRLWWAVTEHM 446



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 20/41 (48%), Positives = 26/41 (63%)
 Frame = +2

Query: 545 ADECPAHIEHTSAADGSAMGVIVTRASMLAHCRMLLVACNY 667
           ADE  A+IE+T+  DG+  G  VTR ++ AHCR L  A  Y
Sbjct: 460 ADETIAYIEYTTGNDGTVKGCCVTRQAVFAHCRALTTAMEY 500



 Score = 34.3 bits (75), Expect = 0.085
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +3

Query: 264  INFICAFYGCLQAGIVPVPIEVPL 335
            I+ + AF+GCL AG+VPV I+ P+
Sbjct: 1004 IDLVAAFFGCLSAGLVPVCIKPPV 1027


>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical
           protein R10E8.6 protein.
          Length = 1696

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +1

Query: 172 HSKAATGGPLSGDNSIKLGDRVALVYPKTIRLTSYARST 288
           HSK  T       NS ++G R+  V   TIRLT Y RST
Sbjct: 24  HSKILTSTLKRLQNSTRIGIRIT-VSICTIRLTIYTRST 61


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
           protein F36H2.3 protein.
          Length = 1388

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +3

Query: 492 STEKLPVRRATGSRLLVRLMNVQRTSNTPPPLTDPQWELSLP 617
           ST    V  AT + +L  L +V  TS T     D +WE SLP
Sbjct: 297 STSINSVPTATRATVLCSLGHVPTTSVTSSKCVDGEWEPSLP 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,768,908
Number of Sequences: 27780
Number of extensions: 354311
Number of successful extensions: 889
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)