Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0833
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62900.1 68416.m07066 expressed protein ; expression supporte...    30   1.7  
At2g21850.1 68415.m02596 DC1 domain-containing protein contains ...    29   3.0  
At3g48990.1 68416.m05351 AMP-dependent synthetase and ligase fam...    29   3.9  
At5g62180.1 68418.m07805 expressed protein similar to PrMC3, Pin...    28   6.8  
At5g59540.1 68418.m07461 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   6.8  
At3g16170.1 68416.m02041 acyl-activating enzyme 13 (AAE13) simil...    28   6.8  
At1g76170.1 68414.m08845 expressed protein  contains Pfam profil...    28   6.8  
At5g01920.1 68418.m00111 protein kinase family protein contains ...    27   9.0  
At1g69720.1 68414.m08023 heme oxygenase 3 (HO3) similar to heme ...    27   9.0  

>At3g62900.1 68416.m07066 expressed protein ; expression supported
           by MPSS
          Length = 1401

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 166 HLHSKAATGGPLSGDNSIKLGDRVALVYPKTIRLTSYARSTDAYKLE 306
           H + K  + G +  D   KLGD  A  YP+ +     ++++D+ K E
Sbjct: 384 HENPKTISAGSVREDKKAKLGDNEASGYPRKVGKYKGSKASDSVKKE 430


>At2g21850.1 68415.m02596 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 772

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = -1

Query: 221 FMELSPLNGPPVAAFE-CKCFVEQCVSNFQ*AA*ELSICKGITELPIRIEHSCHVS--LK 51
           F    PL  P +A    C    +  +     +  + S+CKG ++LP ++ H  H    L+
Sbjct: 7   FSHECPLTSPKIAVDGICSICYKDDLVELACSPCDFSLCKGCSQLPQKVWHDFHPDHPLE 66

Query: 50  RGLHRVSTPPWH 15
             LH+    P H
Sbjct: 67  FCLHQYDQKPEH 78


>At3g48990.1 68416.m05351 AMP-dependent synthetase and ligase family
           protein similar to peroxisomal-coenzyme A synthetase
           (FAT2) [gi:586339] from Saccharomyces cerevisiae;
           contains Pfam AMP-binding enzyme domain PF00501;
           identical to cDNA; identical to cDNA adenosine
           monophosphate binding protein 3 AMPBP3
           (AMPBP3)GI:20799714
          Length = 514

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 145 LTHCSTKHLHSKAATGGPLSGDNSIKLGDRVALVYPKTI 261
           LTH     L  +AA+   L  D  IK GD VAL +P T+
Sbjct: 31  LTHARLHDLIERAASR--LVSDAGIKPGDVVALTFPNTV 67


>At5g62180.1 68418.m07805 expressed protein similar to PrMC3, Pinus
           radiata, GI:5487873
          Length = 327

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 540 VRLMNVQRTSNTPPPLTDPQWELSLP 617
           +RLMN Q     PP +TD  W+LSLP
Sbjct: 211 IRLMNDQVC---PPIVTDVMWDLSLP 233


>At5g59540.1 68418.m07461 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to
           desacetoxyvindoline-4-hydroxylase [Catharanthus roseus]
           GI:2352812; contains Pfam profile PF03171:
           oxidoreductase, 2OG-Fe(II) oxygenase family
          Length = 366

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 285 YGCLQAGIVPVPIEVPLTRRDAGLQQVGFLLGSCGIQYALTSDA 416
           + C  A   P P E+P T RDA  +    +L   G+ + L S+A
Sbjct: 157 FSCYIAPDPPAPEEIPETCRDAMFEYSKHVLSFGGLLFELLSEA 200


>At3g16170.1 68416.m02041 acyl-activating enzyme 13 (AAE13) similar
           to malonyl CoA synthetase GB:AAF28840 from
           [Bradyrhizobium japonicum]; contains Pfam AMP-binding
           enzyme domain PF00501; identical to cDNA acyl-activating
           enzyme 13 (At3g16170) GI:29893232, acyl-activating
           enzyme 13 [Arabidopsis thaliana] GI:29893233
          Length = 544

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 557 PAHIEHTSAADGSAMGVIVTRASMLAHCRMLLVACNY 667
           PA I +TS   G   GV+ T  S+ +  RML  A  Y
Sbjct: 172 PALIVYTSGTTGKPKGVVHTHNSINSQVRMLTEAWEY 208


>At1g76170.1 68414.m08845 expressed protein  contains Pfam profile
           PF01171: PP-loop family
          Length = 299

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 346 SRRVSGTSIGTGTIPACRHP*NAHMKLIGSFLGTPEQLDPQALWSCLRS 200
           SR  S T+   G IP C +  NA+      F+   E+L P+A+   ++S
Sbjct: 170 SRCTSITTGEDGPIPRCIYSPNAYRGFACEFINDLERLRPRAILDIIKS 218


>At5g01920.1 68418.m00111 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 495

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +3

Query: 300 AGIVPVPIEVPLTRRDAGLQQVGFLLGSCGIQYALTS-DACLKGLPKTSSGDVVSFRGWP 476
           AGIV + + VP  R  AGL+   F L    ++Y L       +  P  S  D+ S RGW 
Sbjct: 392 AGIVLLQMAVPTLRSTAGLK--NFNLEIKSVEYDLNRWRERTRTRPDLSILDLDSGRGWD 449

Query: 477 SLHWVSTEKLPVRR 518
            +  + +E+  +RR
Sbjct: 450 LVTKLISERGSLRR 463


>At1g69720.1 68414.m08023 heme oxygenase 3 (HO3) similar to heme
           oxygenase 3 [Arabidopsis thaliana]
           gi|14485563|gb|AAK63006
          Length = 285

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +3

Query: 96  SNSLTYGKLLSRSLKIAHALLNKTFTFKGRNGGPIERRQLHKAWGSSCSGVPKNDPINFI 275
           SN  TY    +  L+ A +L      FK +     E     K +      + +NDP  FI
Sbjct: 140 SNFPTYAGFKNTGLERAESLRKDLEWFKEQGYEIPEPMAPGKTYSEYLKDLAENDPQAFI 199

Query: 276 CAFY 287
           C FY
Sbjct: 200 CHFY 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,991,038
Number of Sequences: 28952
Number of extensions: 332206
Number of successful extensions: 1055
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)