Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0831
(232 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 141 1e-35
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 88 1e-19
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 86 7e-19
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 77 4e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 54 3e-09
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 52 1e-08
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 46 7e-07
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 32 0.009
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.020
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 29 0.062
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 29 0.062
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 28 0.14
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 27 0.25
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 0.25
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i... 27 0.33
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 0.44
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 26 0.58
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 0.58
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 1.0
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 1.3
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch... 25 1.8
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 24 2.3
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 24 3.1
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 24 3.1
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 23 4.1
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 23 4.1
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 23 4.1
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 23 4.1
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 23 5.4
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 23 5.4
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 23 7.2
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 23 7.2
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 23 7.2
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 23 7.2
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 23 7.2
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 23 7.2
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 23 7.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 22 9.5
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 22 9.5
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 22 9.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 22 9.5
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 22 9.5
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 22 9.5
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 22 9.5
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 22 9.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 22 9.5
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 22 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 141 bits (341), Expect = 1e-35
Identities = 67/76 (88%), Positives = 69/76 (90%)
Frame = +3
Query: 3 TFYNELRVAPEEHPVLLTEAPLNPKDNREKMTQIMFETFNTPAMCVAIQAVLSLYASGRT 182
TFYNELRVAPEEHP LLTEAPLNPK NREKMTQI+FETFN PA VAIQAVLSLYASGRT
Sbjct: 89 TFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRT 148
Query: 183 TGIGLDSGDGVSHTEP 230
TGI LDSGDGV+HT P
Sbjct: 149 TGIVLDSGDGVTHTVP 164
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 88.2 bits (209), Expect = 1e-19
Identities = 40/76 (52%), Positives = 54/76 (71%)
Frame = +3
Query: 3 TFYNELRVAPEEHPVLLTEAPLNPKDNREKMTQIMFETFNTPAMCVAIQAVLSLYASGRT 182
TF+ +L++ P +LLTE P+NP NREKM + MFE + + VAIQAVLSLYA G +
Sbjct: 89 TFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLS 148
Query: 183 TGIGLDSGDGVSHTEP 230
+G+ +DSGDGV+H P
Sbjct: 149 SGVVVDSGDGVTHIVP 164
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 85.8 bits (203), Expect = 7e-19
Identities = 38/72 (52%), Positives = 52/72 (72%)
Frame = +3
Query: 15 ELRVAPEEHPVLLTEAPLNPKDNREKMTQIMFETFNTPAMCVAIQAVLSLYASGRTTGIG 194
+L PEEHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGI
Sbjct: 98 QLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIV 157
Query: 195 LDSGDGVSHTEP 230
L+ GDG++H+ P
Sbjct: 158 LECGDGLTHSVP 169
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 76.6 bits (180), Expect = 4e-16
Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Frame = +3
Query: 3 TFYNELRVAPEEHPVLLTEAPLNPKDNREKMTQIMFETFNTPAMCVAIQAVLSLYASGRT 182
+ + LR PE+H LLTE PLNP +NRE +IMFE+FN + +A+QAVL+L AS +
Sbjct: 112 SLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTS 171
Query: 183 --------TGIGLDSGDGVSHTEP 230
TG +DSGDGV+H P
Sbjct: 172 SKVTDRSLTGTVVDSGDGVTHIIP 195
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 54.0 bits (124), Expect = 3e-09
Identities = 26/64 (40%), Positives = 38/64 (59%)
Frame = +3
Query: 15 ELRVAPEEHPVLLTEAPLNPKDNREKMTQIMFETFNTPAMCVAIQAVLSLYASGRTTGIG 194
+L+ P EHP+L+TE NP +NR K + MFE+ PA +A Q + +ASG+ T
Sbjct: 91 QLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACL 150
Query: 195 LDSG 206
+D G
Sbjct: 151 VDIG 154
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 52.0 bits (119), Expect = 1e-08
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = +3
Query: 36 EHPVLLTEAPLNPKDNREKMTQIMFETFNTPAMCVAIQAVLSLYASGR--TTGIGLDSGD 209
EHP+ +TE NP R MT+++FE +N P++ I + S Y + + ++GI L+ G+
Sbjct: 115 EHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGN 174
Query: 210 GVSHTEP 230
SH P
Sbjct: 175 AASHVIP 181
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 46.0 bits (104), Expect = 7e-07
Identities = 21/72 (29%), Positives = 41/72 (56%)
Frame = +3
Query: 15 ELRVAPEEHPVLLTEAPLNPKDNREKMTQIMFETFNTPAMCVAIQAVLSLYASGRTTGIG 194
+L+V P E+ +++TE NP+ R+++ + FE + PA + QAV +A+ ++T +
Sbjct: 94 KLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALI 153
Query: 195 LDSGDGVSHTEP 230
+D G + P
Sbjct: 154 VDIGSDNASVTP 165
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 32.3 bits (70), Expect = 0.009
Identities = 23/74 (31%), Positives = 30/74 (40%)
Frame = +1
Query: 7 STMSCVSPPRNTQSCSLRLPSTPRTTERK*PRSCSKHSTRPPCASPSKPCSRCTRPVVPP 186
ST S S P T S S +PS +++ +H T P +K SR P+ PP
Sbjct: 127 STPSISSIPHTTSSVSNDIPSVLGSSDHPIDLDNPEHLTPPSSFITAKQLSRLPTPLPPP 186
Query: 187 VSGWTPATECPTPS 228
S P T S
Sbjct: 187 SSSSLPTGTISTNS 200
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.1 bits (67), Expect = 0.020
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 6 FYNELRVAPEEHPVLLTE--APLNPKDNREKMTQIMFETFNTPAM---CVAIQ 149
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 29.5 bits (63), Expect = 0.062
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Frame = +1
Query: 1 IPSTMSC-VSPPRNTQSCSLRLPSTPR-----TTERK*PRSCSKHSTRPPCASPSKPCSR 162
+P+T S V+P +++S S PSTPR T + P+ +S P ++PSK
Sbjct: 425 LPTTTSPKVNPEPHSESISDTRPSTPRKVPPSTVPKMNPKLQGGNSVTAP-STPSKVLPA 483
Query: 163 CTRPVVPPVSGWTPATECPTPS 228
+ V P G +T TP+
Sbjct: 484 MSPKVAPKFQGGRSSTAPSTPN 505
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 29.5 bits (63), Expect = 0.062
Identities = 17/65 (26%), Positives = 24/65 (36%)
Frame = +1
Query: 37 NTQSCSLRLPSTPRTTERK*PRSCSKHSTRPPCASPSKPCSRCTRPVVPPVSGWTPATEC 216
+T S + T TT + + PP P + T PV PV+ A
Sbjct: 337 STPSAGYQTVQTTTTTTEAAAAQYPQAAFPPPPVMPQPAAAAVTTPVAAPVAAAAAAVPV 396
Query: 217 PTPSP 231
P P+P
Sbjct: 397 PPPAP 401
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 28.3 bits (60), Expect = 0.14
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 57 EAPLNPKDNREKMTQIMFETFNTPAMCVAIQAVLSLYASGRTTGIGL--DSGDGVSHTEP 230
+A L+ + REK+ Q+ + T + CV + + + GR+TG L DS + + EP
Sbjct: 32 KANLSKNEIREKLAQM----YKTDSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEP 87
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 27.5 bits (58), Expect = 0.25
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 48 LLTEAPLNPKDNREKMTQIMFETFN 122
+L APL+ ++ +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.5 bits (58), Expect = 0.25
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 62 SPQPQGQQRENDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 211
+PQ + EN+ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
5-->4-isomerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 340
Score = 27.1 bits (57), Expect = 0.33
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -1
Query: 202 ESSPIPVVRPDAYSESTA 149
ES PIP V DAY+ES A
Sbjct: 132 ESQPIPEVHMDAYNESKA 149
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 0.44
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 31 PRNTQSCSLRLPSTPRTTERK*PRSCSKHSTRPPCASPSKPCSRCT 168
P+ +Q+ S+ LP+ PRTT P + + P P P S T
Sbjct: 814 PKTSQASSI-LPTVPRTTSYTSPYATTSSHITPADVHPLPPPSTST 858
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 26.2 bits (55), Expect = 0.58
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1
Query: 229 GSVWDTPSPESSPIPVVRPDAYSESTAWMATHMAGVLNVSNMIWVIFSLLSL 74
GS PS PIP++ P+ S + + + L+VS I FS+L +
Sbjct: 493 GSTKTLPSIGKKPIPLLDPNPISSTPISITFWVIMFLSVSFTIVTFFSILRI 544
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 0.58
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 25 SPPRNTQSCSLRLPSTPRTTER 90
SPP++T+ S R PS P + E+
Sbjct: 285 SPPQSTRPSSTRFPSVPLSDEK 306
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 1.0
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Frame = +1
Query: 64 PSTPRTTERK*PRSCSKHSTRPPCA--SPSKPCSRCTRPVVPPVSGWTPATECPTPS 228
PS P + P PP A +P P P +PP + P P P+
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPA 485
Score = 24.6 bits (51), Expect = 1.8
Identities = 21/76 (27%), Positives = 27/76 (35%)
Frame = +1
Query: 1 IPSTMSCVSPPRNTQSCSLRLPSTPRTTERK*PRSCSKHSTRPPCASPSKPCSRCTRPVV 180
IP + PP S R + P T P S + PP A PS P P +
Sbjct: 395 IPGRSAPALPPLGNAS---RTSTPPVPTPPSLPPSAPP--SLPPSAPPSLPMGAPAAPPL 449
Query: 181 PPVSGWTPATECPTPS 228
PP + P P+
Sbjct: 450 PPSAPIAPPLPAGMPA 465
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 1.3
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +1
Query: 136 ASPSKPCSRCTRPVVPPVSGWT---PATECPTPS 228
AS KP S+ TRP +P + T P P PS
Sbjct: 61 ASFQKPSSKATRPYIPSYTRLTYSVPPLPIPPPS 94
>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
Rga5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 24.6 bits (51), Expect = 1.8
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 31 PRNTQSCSLRLPS-TPRTTERK*PRSCSKHSTRPPCASPSKPCSRCTRPVVPPVS 192
P S S+R+ S PR K RS S+HS+ SPS S V P S
Sbjct: 276 PTPIASTSIRINSFNPRNGSIKRWRSFSRHSSATYSNSPSSNFSNMKSSEVDPGS 330
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 24.2 bits (50), Expect = 2.3
Identities = 20/68 (29%), Positives = 26/68 (38%)
Frame = +1
Query: 25 SPPRNTQSCSLRLPSTPRTTERK*PRSCSKHSTRPPCASPSKPCSRCTRPVVPPVSGWTP 204
S +T S S PRT+ P + S +PP A S P T P + + T
Sbjct: 412 STANDTNGSSSSSSSNPRTSS---PLA-SNAENKPPVAQQSPPVLLPTLPPIQTTTIQTS 467
Query: 205 ATECPTPS 228
P PS
Sbjct: 468 REVAPPPS 475
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 151 PCSRCTRPVVPPVSGWTPATECP 219
PC+ + PPV+ TP +CP
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCP 643
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/40 (27%), Positives = 16/40 (40%)
Frame = +1
Query: 46 SCSLRLPSTPRTTERK*PRSCSKHSTRPPCASPSKPCSRC 165
+C +P P P+SC + C S+PC C
Sbjct: 634 ACGTPIPDCPYLCVL--PKSCHHPQVKHNCHPTSEPCPPC 671
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +3
Query: 33 EEHPVLLTEAPLNPKDNREKMTQIMFETFNTPAMCVAIQAV 155
++ P L +++ K ++Q++F N PAMC ++++
Sbjct: 441 KKEPNLESQSSNKIKTTIFPVSQLLFSNANVPAMCQRLRSL 481
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 83 VVLGVEGSLSEQDWVF 36
V + V GSL EQ+W F
Sbjct: 96 VDMAVNGSLFEQEWAF 111
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 23.4 bits (48), Expect = 4.1
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +1
Query: 25 SPPRNTQSCSLRLP-STPRTTERK*P---RSCSKHSTRPPCASPSKPCSRCTR 171
+PP +T + ++ P +T +++ P R+C+K ++PC RC +
Sbjct: 261 TPPLSTVNKIIKKPKATTGKVKKRLPQAKRACAKCQKDNKKCDDARPCQRCIK 313
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 41 PSPAH*GSPQPQGQQRENDPDHVRNIQHARHVRRHPS 151
PS H G+P P G+Q + N+Q + + P+
Sbjct: 108 PSANHHGNPFPNGKQSIKAMPSLVNLQEDSVISKFPN 144
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 23.4 bits (48), Expect = 4.1
Identities = 22/72 (30%), Positives = 27/72 (37%)
Frame = +1
Query: 16 SCVSPPRNTQSCSLRLPSTPRTTERK*PRSCSKHSTRPPCASPSKPCSRCTRPVVPPVSG 195
S +SP S S S +T S +S P SP+ P T P P S
Sbjct: 1545 SAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1604
Query: 196 WTPATECPTPSP 231
AT P+ SP
Sbjct: 1605 SYSATS-PSYSP 1615
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 208 SPESSPIPVVRPDAYSESTAWMATHMA 128
S SP+PV++ A SE+ + H A
Sbjct: 122 SVAESPVPVLQSSAVSEADDMASAHSA 148
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 133 CASPSKPCSRCTRPVVPPVSGWTPATE 213
C+S KP + R +PP+S +PA +
Sbjct: 562 CSSTPKPFNSKLRAHLPPLSIGSPAVQ 588
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +1
Query: 64 PSTPRTTERK*PRSCSKHSTRPPCASPSKPCSRC 165
P + ++ P+SC R +PCSRC
Sbjct: 5 PPALKKFRKRSPKSCLICRRRKVKCDRQQPCSRC 38
>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 131 HVRRHPSRALAVRVRSYHRYRAG 199
+VR HP A+ +R H Y +G
Sbjct: 248 YVRLHPGEAVFLRALDPHAYVSG 270
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 110 RNIQHARHVRRHPSRALAVRVRSYH 184
RN+ R+ +R SR A++ SYH
Sbjct: 47 RNVAIQRNAKREFSRCAALKNFSYH 71
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 227 LGVGHSVAGVQPDTGGTTGRVQREHGLDG 141
LG+ SV G+ D GG+ +GL G
Sbjct: 215 LGIKASVLGIGSDIGGSIRSPAANNGLFG 243
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 100 RSCSKHSTRPPCASPSKPCS 159
R S+H R PC SP S
Sbjct: 510 RKGSRHGPREPCLSPDASSS 529
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 65 PQPQGQQRENDPDHVRNIQHARHVRRHPS 151
P P+G +RE D +++ A H+ P+
Sbjct: 719 PVPRGMEREGDCEYIAPEVLANHLYDKPA 747
Score = 22.2 bits (45), Expect = 9.5
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = +1
Query: 7 STMSCVSPPRNTQSCSLRLPSTPRTTERK*PRSCSKHSTRPPCASPSKP 153
ST S S NT SL P T+ + H PP + S+P
Sbjct: 44 STSSTSSQKPNTSFTSLFGPRKQTTSSPSFSHAAPLHPLSPPSFTHSQP 92
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 109 SKHSTRPPCASPSKPCSRCTRPVVPPVSGWTPATECPTPSP 231
S+H + +PS + P+ P ++ W P T+ PT P
Sbjct: 244 SQHKSVNYSVTPSSINNHTAVPLSPTLAVWLPMTQ-PTFQP 283
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = +1
Query: 151 PCSRCTRPVVPPVSGWTPATECPTPSP 231
P + P V P S P PTP P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPP 1709
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 22.2 bits (45), Expect = 9.5
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 64 PSTPRTTERK*PRSCSKHSTRPPCASPSKPCSRCTRPVVPPVSGWTPA 207
P T T S S +S++ + S+P P +PP S TPA
Sbjct: 252 PDTNSTLTYTPSNSQSIYSSQSQPSPYSRPLLSSVHPNLPPGSQSTPA 299
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -1
Query: 157 STAWMATHMAGVLNVSNMI 101
ST TH+ G+LN N +
Sbjct: 351 STHLTRTHLGGILNAGNTV 369
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 172 PVVPPVSGWTPATECPTPSP 231
P PP G+ P ++ P P P
Sbjct: 10 PPPPPPPGFEPPSQPPPPPP 29
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -1
Query: 199 SSPIPVVRPDAYSESTAWMATHMAGVLNVSNM 104
S P PV+ PD + + +M V+N++ +
Sbjct: 425 SIPYPVILPDLEIPGSQSIVENMRAVINLAKL 456
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 127 PPCASPSKPCSRCTRPVVP 183
PP A+PS S+ T+ VP
Sbjct: 400 PPLATPSSRNSKSTQSAVP 418
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 92 NDPDHVRNIQHARHVRRHPSRALAVR 169
N DH +I+HA +++ H + AVR
Sbjct: 924 NTGDHPVSIKHAINIKFHDGFSNAVR 949
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 133 CASPSKPCSRCTRPVVPPVSGWTPATE 213
C SP K TR V V+ WT E
Sbjct: 258 CVSPEKRSLAKTREAVLAVTKWTTDDE 284
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 22.2 bits (45), Expect = 9.5
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +1
Query: 7 STMSCVSPPRNTQ-SCSLRLP-STPRTTERK*PRSCSKHSTRPPCASPSKPCSRCTRPVV 180
+++S SP T SC+ STP TE S + + PS S T +
Sbjct: 62 ASLSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSI 121
Query: 181 PPVSGWTPATECPTPS 228
PP G + + TP+
Sbjct: 122 PPTGGSSSLSTPITPT 137
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 22.2 bits (45), Expect = 9.5
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -1
Query: 196 SPIPVVRPDAYSESTAWMATHMAGVLNVSNMIWVIFSLLSLGLRG 62
+P+P R +T W TH+ V N+I+ + S G G
Sbjct: 27 NPMPTFR---LLRNTKWSWTHLQYVFLAGNLIFACIVIESPGFWG 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,197,045
Number of Sequences: 5004
Number of extensions: 24695
Number of successful extensions: 105
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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