BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0831 (232 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 141 1e-35 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 88 1e-19 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 86 7e-19 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 77 4e-16 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 54 3e-09 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 52 1e-08 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 46 7e-07 SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 32 0.009 SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.020 SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 29 0.062 SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 29 0.062 SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 28 0.14 SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 27 0.25 SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 0.25 SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i... 27 0.33 SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 0.44 SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 26 0.58 SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 0.58 SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 1.0 SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 1.3 SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch... 25 1.8 SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 24 2.3 SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 24 3.1 SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 24 3.1 SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 23 4.1 SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 23 4.1 SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 23 4.1 SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 23 4.1 SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 23 5.4 SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 23 5.4 SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 23 7.2 SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 23 7.2 SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 23 7.2 SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 23 7.2 SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 23 7.2 SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 23 7.2 SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 23 7.2 SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 22 9.5 SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 22 9.5 SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 22 9.5 SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 22 9.5 SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 22 9.5 SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 22 9.5 SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 22 9.5 SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 22 9.5 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 22 9.5 SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 22 9.5 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 141 bits (341), Expect = 1e-35 Identities = 67/76 (88%), Positives = 69/76 (90%) Frame = +3 Query: 3 TFYNELRVAPEEHPVLLTEAPLNPKDNREKMTQIMFETFNTPAMCVAIQAVLSLYASGRT 182 TFYNELRVAPEEHP LLTEAPLNPK NREKMTQI+FETFN PA VAIQAVLSLYASGRT Sbjct: 89 TFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRT 148 Query: 183 TGIGLDSGDGVSHTEP 230 TGI LDSGDGV+HT P Sbjct: 149 TGIVLDSGDGVTHTVP 164 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 88.2 bits (209), Expect = 1e-19 Identities = 40/76 (52%), Positives = 54/76 (71%) Frame = +3 Query: 3 TFYNELRVAPEEHPVLLTEAPLNPKDNREKMTQIMFETFNTPAMCVAIQAVLSLYASGRT 182 TF+ +L++ P +LLTE P+NP NREKM + MFE + + VAIQAVLSLYA G + Sbjct: 89 TFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLS 148 Query: 183 TGIGLDSGDGVSHTEP 230 +G+ +DSGDGV+H P Sbjct: 149 SGVVVDSGDGVTHIVP 164 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 85.8 bits (203), Expect = 7e-19 Identities = 38/72 (52%), Positives = 52/72 (72%) Frame = +3 Query: 15 ELRVAPEEHPVLLTEAPLNPKDNREKMTQIMFETFNTPAMCVAIQAVLSLYASGRTTGIG 194 +L PEEHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGI Sbjct: 98 QLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIV 157 Query: 195 LDSGDGVSHTEP 230 L+ GDG++H+ P Sbjct: 158 LECGDGLTHSVP 169 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 76.6 bits (180), Expect = 4e-16 Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 8/84 (9%) Frame = +3 Query: 3 TFYNELRVAPEEHPVLLTEAPLNPKDNREKMTQIMFETFNTPAMCVAIQAVLSLYASGRT 182 + + LR PE+H LLTE PLNP +NRE +IMFE+FN + +A+QAVL+L AS + Sbjct: 112 SLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTS 171 Query: 183 --------TGIGLDSGDGVSHTEP 230 TG +DSGDGV+H P Sbjct: 172 SKVTDRSLTGTVVDSGDGVTHIIP 195 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 54.0 bits (124), Expect = 3e-09 Identities = 26/64 (40%), Positives = 38/64 (59%) Frame = +3 Query: 15 ELRVAPEEHPVLLTEAPLNPKDNREKMTQIMFETFNTPAMCVAIQAVLSLYASGRTTGIG 194 +L+ P EHP+L+TE NP +NR K + MFE+ PA +A Q + +ASG+ T Sbjct: 91 QLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACL 150 Query: 195 LDSG 206 +D G Sbjct: 151 VDIG 154 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 52.0 bits (119), Expect = 1e-08 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%) Frame = +3 Query: 36 EHPVLLTEAPLNPKDNREKMTQIMFETFNTPAMCVAIQAVLSLYASGR--TTGIGLDSGD 209 EHP+ +TE NP R MT+++FE +N P++ I + S Y + + ++GI L+ G+ Sbjct: 115 EHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGN 174 Query: 210 GVSHTEP 230 SH P Sbjct: 175 AASHVIP 181 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 46.0 bits (104), Expect = 7e-07 Identities = 21/72 (29%), Positives = 41/72 (56%) Frame = +3 Query: 15 ELRVAPEEHPVLLTEAPLNPKDNREKMTQIMFETFNTPAMCVAIQAVLSLYASGRTTGIG 194 +L+V P E+ +++TE NP+ R+++ + FE + PA + QAV +A+ ++T + Sbjct: 94 KLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALI 153 Query: 195 LDSGDGVSHTEP 230 +D G + P Sbjct: 154 VDIGSDNASVTP 165 >SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces pombe|chr 1|||Manual Length = 897 Score = 32.3 bits (70), Expect = 0.009 Identities = 23/74 (31%), Positives = 30/74 (40%) Frame = +1 Query: 7 STMSCVSPPRNTQSCSLRLPSTPRTTERK*PRSCSKHSTRPPCASPSKPCSRCTRPVVPP 186 ST S S P T S S +PS +++ +H T P +K SR P+ PP Sbjct: 127 STPSISSIPHTTSSVSNDIPSVLGSSDHPIDLDNPEHLTPPSSFITAKQLSRLPTPLPPP 186 Query: 187 VSGWTPATECPTPS 228 S P T S Sbjct: 187 SSSSLPTGTISTNS 200 >SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1666 Score = 31.1 bits (67), Expect = 0.020 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Frame = +3 Query: 6 FYNELRVAPEEHPVLLTE--APLNPKDNREKMTQIMFETFNTPAM---CVAIQ 149 +Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451 >SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces pombe|chr 3|||Manual Length = 1008 Score = 29.5 bits (63), Expect = 0.062 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 6/82 (7%) Frame = +1 Query: 1 IPSTMSC-VSPPRNTQSCSLRLPSTPR-----TTERK*PRSCSKHSTRPPCASPSKPCSR 162 +P+T S V+P +++S S PSTPR T + P+ +S P ++PSK Sbjct: 425 LPTTTSPKVNPEPHSESISDTRPSTPRKVPPSTVPKMNPKLQGGNSVTAP-STPSKVLPA 483 Query: 163 CTRPVVPPVSGWTPATECPTPS 228 + V P G +T TP+ Sbjct: 484 MSPKVAPKFQGGRSSTAPSTPN 505 >SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces pombe|chr 2|||Manual Length = 466 Score = 29.5 bits (63), Expect = 0.062 Identities = 17/65 (26%), Positives = 24/65 (36%) Frame = +1 Query: 37 NTQSCSLRLPSTPRTTERK*PRSCSKHSTRPPCASPSKPCSRCTRPVVPPVSGWTPATEC 216 +T S + T TT + + PP P + T PV PV+ A Sbjct: 337 STPSAGYQTVQTTTTTTEAAAAQYPQAAFPPPPVMPQPAAAAVTTPVAAPVAAAAAAVPV 396 Query: 217 PTPSP 231 P P+P Sbjct: 397 PPPAP 401 >SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosaccharomyces pombe|chr 2|||Manual Length = 134 Score = 28.3 bits (60), Expect = 0.14 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Frame = +3 Query: 57 EAPLNPKDNREKMTQIMFETFNTPAMCVAIQAVLSLYASGRTTGIGL--DSGDGVSHTEP 230 +A L+ + REK+ Q+ + T + CV + + + GR+TG L DS + + EP Sbjct: 32 KANLSKNEIREKLAQM----YKTDSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEP 87 >SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces pombe|chr 2|||Manual Length = 226 Score = 27.5 bits (58), Expect = 0.25 Identities = 10/25 (40%), Positives = 19/25 (76%) Frame = +3 Query: 48 LLTEAPLNPKDNREKMTQIMFETFN 122 +L APL+ ++ +KM +++FET+N Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205 >SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1628 Score = 27.5 bits (58), Expect = 0.25 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +2 Query: 62 SPQPQGQQRENDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 211 +PQ + EN+ D++R++ +RH RR P +A + R H + R R Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474 >SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-isomerase |Schizosaccharomyces pombe|chr 2|||Manual Length = 340 Score = 27.1 bits (57), Expect = 0.33 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = -1 Query: 202 ESSPIPVVRPDAYSESTA 149 ES PIP V DAY+ES A Sbjct: 132 ESQPIPEVHMDAYNESKA 149 >SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1224 Score = 26.6 bits (56), Expect = 0.44 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +1 Query: 31 PRNTQSCSLRLPSTPRTTERK*PRSCSKHSTRPPCASPSKPCSRCT 168 P+ +Q+ S+ LP+ PRTT P + + P P P S T Sbjct: 814 PKTSQASSI-LPTVPRTTSYTSPYATTSSHITPADVHPLPPPSTST 858 >SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1072 Score = 26.2 bits (55), Expect = 0.58 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = -1 Query: 229 GSVWDTPSPESSPIPVVRPDAYSESTAWMATHMAGVLNVSNMIWVIFSLLSL 74 GS PS PIP++ P+ S + + + L+VS I FS+L + Sbjct: 493 GSTKTLPSIGKKPIPLLDPNPISSTPISITFWVIMFLSVSFTIVTFFSILRI 544 >SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 551 Score = 26.2 bits (55), Expect = 0.58 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +1 Query: 25 SPPRNTQSCSLRLPSTPRTTER 90 SPP++T+ S R PS P + E+ Sbjct: 285 SPPQSTRPSSTRFPSVPLSDEK 306 >SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 574 Score = 25.4 bits (53), Expect = 1.0 Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 2/57 (3%) Frame = +1 Query: 64 PSTPRTTERK*PRSCSKHSTRPPCA--SPSKPCSRCTRPVVPPVSGWTPATECPTPS 228 PS P + P PP A +P P P +PP + P P P+ Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPA 485 Score = 24.6 bits (51), Expect = 1.8 Identities = 21/76 (27%), Positives = 27/76 (35%) Frame = +1 Query: 1 IPSTMSCVSPPRNTQSCSLRLPSTPRTTERK*PRSCSKHSTRPPCASPSKPCSRCTRPVV 180 IP + PP S R + P T P S + PP A PS P P + Sbjct: 395 IPGRSAPALPPLGNAS---RTSTPPVPTPPSLPPSAPP--SLPPSAPPSLPMGAPAAPPL 449 Query: 181 PPVSGWTPATECPTPS 228 PP + P P+ Sbjct: 450 PPSAPIAPPLPAGMPA 465 >SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosaccharomyces pombe|chr 2|||Manual Length = 663 Score = 25.0 bits (52), Expect = 1.3 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%) Frame = +1 Query: 136 ASPSKPCSRCTRPVVPPVSGWT---PATECPTPS 228 AS KP S+ TRP +P + T P P PS Sbjct: 61 ASFQKPSSKATRPYIPSYTRLTYSVPPLPIPPPS 94 >SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Schizosaccharomyces pombe|chr 2|||Manual Length = 361 Score = 24.6 bits (51), Expect = 1.8 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Frame = +1 Query: 31 PRNTQSCSLRLPS-TPRTTERK*PRSCSKHSTRPPCASPSKPCSRCTRPVVPPVS 192 P S S+R+ S PR K RS S+HS+ SPS S V P S Sbjct: 276 PTPIASTSIRINSFNPRNGSIKRWRSFSRHSSATYSNSPSSNFSNMKSSEVDPGS 330 >SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosaccharomyces pombe|chr 2|||Manual Length = 695 Score = 24.2 bits (50), Expect = 2.3 Identities = 20/68 (29%), Positives = 26/68 (38%) Frame = +1 Query: 25 SPPRNTQSCSLRLPSTPRTTERK*PRSCSKHSTRPPCASPSKPCSRCTRPVVPPVSGWTP 204 S +T S S PRT+ P + S +PP A S P T P + + T Sbjct: 412 STANDTNGSSSSSSSNPRTSS---PLA-SNAENKPPVAQQSPPVLLPTLPPIQTTTIQTS 467 Query: 205 ATECPTPS 228 P PS Sbjct: 468 REVAPPPS 475 >SPCC18.03 |||shuttle craft like transcriptional regulator|Schizosaccharomyces pombe|chr 3|||Manual Length = 1077 Score = 23.8 bits (49), Expect = 3.1 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = +1 Query: 151 PCSRCTRPVVPPVSGWTPATECP 219 PC+ + PPV+ TP +CP Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCP 643 Score = 23.8 bits (49), Expect = 3.1 Identities = 11/40 (27%), Positives = 16/40 (40%) Frame = +1 Query: 46 SCSLRLPSTPRTTERK*PRSCSKHSTRPPCASPSKPCSRC 165 +C +P P P+SC + C S+PC C Sbjct: 634 ACGTPIPDCPYLCVL--PKSCHHPQVKHNCHPTSEPCPPC 671 >SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces pombe|chr 2|||Manual Length = 713 Score = 23.8 bits (49), Expect = 3.1 Identities = 10/41 (24%), Positives = 23/41 (56%) Frame = +3 Query: 33 EEHPVLLTEAPLNPKDNREKMTQIMFETFNTPAMCVAIQAV 155 ++ P L +++ K ++Q++F N PAMC ++++ Sbjct: 441 KKEPNLESQSSNKIKTTIFPVSQLLFSNANVPAMCQRLRSL 481 >SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual Length = 426 Score = 23.4 bits (48), Expect = 4.1 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -3 Query: 83 VVLGVEGSLSEQDWVF 36 V + V GSL EQ+W F Sbjct: 96 VDMAVNGSLFEQEWAF 111 >SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 738 Score = 23.4 bits (48), Expect = 4.1 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Frame = +1 Query: 25 SPPRNTQSCSLRLP-STPRTTERK*P---RSCSKHSTRPPCASPSKPCSRCTR 171 +PP +T + ++ P +T +++ P R+C+K ++PC RC + Sbjct: 261 TPPLSTVNKIIKKPKATTGKVKKRLPQAKRACAKCQKDNKKCDDARPCQRCIK 313 >SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 732 Score = 23.4 bits (48), Expect = 4.1 Identities = 11/37 (29%), Positives = 18/37 (48%) Frame = +2 Query: 41 PSPAH*GSPQPQGQQRENDPDHVRNIQHARHVRRHPS 151 PS H G+P P G+Q + N+Q + + P+ Sbjct: 108 PSANHHGNPFPNGKQSIKAMPSLVNLQEDSVISKFPN 144 >SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 1752 Score = 23.4 bits (48), Expect = 4.1 Identities = 22/72 (30%), Positives = 27/72 (37%) Frame = +1 Query: 16 SCVSPPRNTQSCSLRLPSTPRTTERK*PRSCSKHSTRPPCASPSKPCSRCTRPVVPPVSG 195 S +SP S S S +T S +S P SP+ P T P P S Sbjct: 1545 SAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1604 Query: 196 WTPATECPTPSP 231 AT P+ SP Sbjct: 1605 SYSATS-PSYSP 1615 >SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces pombe|chr 3|||Manual Length = 967 Score = 23.0 bits (47), Expect = 5.4 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = -1 Query: 208 SPESSPIPVVRPDAYSESTAWMATHMA 128 S SP+PV++ A SE+ + H A Sbjct: 122 SVAESPVPVLQSSAVSEADDMASAHSA 148 >SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosaccharomyces pombe|chr 2|||Manual Length = 652 Score = 23.0 bits (47), Expect = 5.4 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +1 Query: 133 CASPSKPCSRCTRPVVPPVSGWTPATE 213 C+S KP + R +PP+S +PA + Sbjct: 562 CSSTPKPFNSKLRAHLPPLSIGSPAVQ 588 >SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr 1|||Manual Length = 563 Score = 22.6 bits (46), Expect = 7.2 Identities = 10/34 (29%), Positives = 15/34 (44%) Frame = +1 Query: 64 PSTPRTTERK*PRSCSKHSTRPPCASPSKPCSRC 165 P + ++ P+SC R +PCSRC Sbjct: 5 PPALKKFRKRSPKSCLICRRRKVKCDRQQPCSRC 38 >SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces pombe|chr 2|||Manual Length = 412 Score = 22.6 bits (46), Expect = 7.2 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = +2 Query: 131 HVRRHPSRALAVRVRSYHRYRAG 199 +VR HP A+ +R H Y +G Sbjct: 248 YVRLHPGEAVFLRALDPHAYVSG 270 >SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 528 Score = 22.6 bits (46), Expect = 7.2 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = +2 Query: 110 RNIQHARHVRRHPSRALAVRVRSYH 184 RN+ R+ +R SR A++ SYH Sbjct: 47 RNVAIQRNAKREFSRCAALKNFSYH 71 >SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual Length = 533 Score = 22.6 bits (46), Expect = 7.2 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -3 Query: 227 LGVGHSVAGVQPDTGGTTGRVQREHGLDG 141 LG+ SV G+ D GG+ +GL G Sbjct: 215 LGIKASVLGIGSDIGGSIRSPAANNGLFG 243 >SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 661 Score = 22.6 bits (46), Expect = 7.2 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = +1 Query: 100 RSCSKHSTRPPCASPSKPCS 159 R S+H R PC SP S Sbjct: 510 RKGSRHGPREPCLSPDASSS 529 >SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosaccharomyces pombe|chr 3|||Manual Length = 877 Score = 22.6 bits (46), Expect = 7.2 Identities = 9/29 (31%), Positives = 16/29 (55%) Frame = +2 Query: 65 PQPQGQQRENDPDHVRNIQHARHVRRHPS 151 P P+G +RE D +++ A H+ P+ Sbjct: 719 PVPRGMEREGDCEYIAPEVLANHLYDKPA 747 Score = 22.2 bits (45), Expect = 9.5 Identities = 15/49 (30%), Positives = 19/49 (38%) Frame = +1 Query: 7 STMSCVSPPRNTQSCSLRLPSTPRTTERK*PRSCSKHSTRPPCASPSKP 153 ST S S NT SL P T+ + H PP + S+P Sbjct: 44 STSSTSSQKPNTSFTSLFGPRKQTTSSPSFSHAAPLHPLSPPSFTHSQP 92 >SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schizosaccharomyces pombe|chr 1|||Manual Length = 690 Score = 22.6 bits (46), Expect = 7.2 Identities = 12/41 (29%), Positives = 20/41 (48%) Frame = +1 Query: 109 SKHSTRPPCASPSKPCSRCTRPVVPPVSGWTPATECPTPSP 231 S+H + +PS + P+ P ++ W P T+ PT P Sbjct: 244 SQHKSVNYSVTPSSINNHTAVPLSPTLAVWLPMTQ-PTFQP 283 >SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF hand and WH2 motif |Schizosaccharomyces pombe|chr 1|||Manual Length = 1794 Score = 22.2 bits (45), Expect = 9.5 Identities = 10/27 (37%), Positives = 11/27 (40%) Frame = +1 Query: 151 PCSRCTRPVVPPVSGWTPATECPTPSP 231 P + P V P S P PTP P Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPP 1709 >SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccharomyces pombe|chr 3|||Manual Length = 466 Score = 22.2 bits (45), Expect = 9.5 Identities = 15/48 (31%), Positives = 21/48 (43%) Frame = +1 Query: 64 PSTPRTTERK*PRSCSKHSTRPPCASPSKPCSRCTRPVVPPVSGWTPA 207 P T T S S +S++ + S+P P +PP S TPA Sbjct: 252 PDTNSTLTYTPSNSQSIYSSQSQPSPYSRPLLSSVHPNLPPGSQSTPA 299 >SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||Manual Length = 498 Score = 22.2 bits (45), Expect = 9.5 Identities = 8/19 (42%), Positives = 11/19 (57%) Frame = -1 Query: 157 STAWMATHMAGVLNVSNMI 101 ST TH+ G+LN N + Sbjct: 351 STHLTRTHLGGILNAGNTV 369 >SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 2363 Score = 22.2 bits (45), Expect = 9.5 Identities = 8/20 (40%), Positives = 11/20 (55%) Frame = +1 Query: 172 PVVPPVSGWTPATECPTPSP 231 P PP G+ P ++ P P P Sbjct: 10 PPPPPPPGFEPPSQPPPPPP 29 >SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Schizosaccharomyces pombe|chr 1|||Manual Length = 775 Score = 22.2 bits (45), Expect = 9.5 Identities = 9/32 (28%), Positives = 17/32 (53%) Frame = -1 Query: 199 SSPIPVVRPDAYSESTAWMATHMAGVLNVSNM 104 S P PV+ PD + + +M V+N++ + Sbjct: 425 SIPYPVILPDLEIPGSQSIVENMRAVINLAKL 456 >SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 871 Score = 22.2 bits (45), Expect = 9.5 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = +1 Query: 127 PPCASPSKPCSRCTRPVVP 183 PP A+PS S+ T+ VP Sbjct: 400 PPLATPSSRNSKSTQSAVP 418 >SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit Ctf18|Schizosaccharomyces pombe|chr 2|||Manual Length = 960 Score = 22.2 bits (45), Expect = 9.5 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +2 Query: 92 NDPDHVRNIQHARHVRRHPSRALAVR 169 N DH +I+HA +++ H + AVR Sbjct: 924 NTGDHPVSIKHAINIKFHDGFSNAVR 949 >SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 474 Score = 22.2 bits (45), Expect = 9.5 Identities = 11/27 (40%), Positives = 12/27 (44%) Frame = +1 Query: 133 CASPSKPCSRCTRPVVPPVSGWTPATE 213 C SP K TR V V+ WT E Sbjct: 258 CVSPEKRSLAKTREAVLAVTKWTTDDE 284 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 22.2 bits (45), Expect = 9.5 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Frame = +1 Query: 7 STMSCVSPPRNTQ-SCSLRLP-STPRTTERK*PRSCSKHSTRPPCASPSKPCSRCTRPVV 180 +++S SP T SC+ STP TE S + + PS S T + Sbjct: 62 ASLSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSI 121 Query: 181 PPVSGWTPATECPTPS 228 PP G + + TP+ Sbjct: 122 PPTGGSSSLSTPITPT 137 >SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosaccharomyces pombe|chr 1|||Manual Length = 422 Score = 22.2 bits (45), Expect = 9.5 Identities = 13/45 (28%), Positives = 20/45 (44%) Frame = -1 Query: 196 SPIPVVRPDAYSESTAWMATHMAGVLNVSNMIWVIFSLLSLGLRG 62 +P+P R +T W TH+ V N+I+ + S G G Sbjct: 27 NPMPTFR---LLRNTKWSWTHLQYVFLAGNLIFACIVIESPGFWG 68 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,197,045 Number of Sequences: 5004 Number of extensions: 24695 Number of successful extensions: 105 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 104 length of database: 2,362,478 effective HSP length: 56 effective length of database: 2,082,254 effective search space used: 41645080 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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