Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0830
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.35 
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13...    26   4.3  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   7.5  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   7.5  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   9.9  
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil...    25   9.9  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    25   9.9  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +1

Query: 85  WNCKFVHYYDCILYFYNHKFRQDYTIKNINKDKQYLIYSQFDNRRQEQ 228
           W C  +  +   ++     FR+ Y + NI   K   +YS  ++ +Q +
Sbjct: 189 WTCLSIENFGISIHVITKNFREYYKLDNIEHVKDETLYSDLEHGKQSR 236


>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
           L13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 587 KEWRCEHFTRTRGHRPGVSR*IRIILPAFITNKSEVKNVFIY 462
           KEW  E     RGH+  + R +  +LP        +K ++IY
Sbjct: 86  KEWTMEEMAAKRGHKDLLRRAVGGMLPRNKLWDRRMKRLYIY 127


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 504 CR*YDSNLPAYARSMTSC 557
           CR YDS++P Y  S   C
Sbjct: 478 CRRYDSSMPTYEESSHEC 495


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -1

Query: 484 KSRMFLSIYILIREAKTLYPFLRKLRGRRSMKFSTFIKNIEKKCTMLIFF 335
           K+  FLS+  +  + K       K   +  +K  T + N  K CT+  FF
Sbjct: 249 KNEPFLSVVFIYPQIKPHLLSCLKNTHQELIKLETEVYNATKNCTLFQFF 298


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 121 LYFYNHKFRQDYTIKNINKDKQYLIYSQFDNRRQEQ 228
           L +YN   RQ     N+N +K   I+S  +   +EQ
Sbjct: 226 LSYYNGSVRQASMNNNVNNNKSKDIWSSSNTEEREQ 261


>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 195

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 566 NVRTSIPCGWFTIQYTD*NNESSFVFF 646
           N+  S+ CG+  + YT  NN S   +F
Sbjct: 35  NLAKSMLCGFIHVSYTSPNNTSLTTYF 61


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 590 HKEWRCEHFTRTRGHRPGVSR*IRII 513
           H EW  EH  R +   P + R IR++
Sbjct: 248 HTEWNLEHIPRLKLVTPALMRPIRML 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,116
Number of Sequences: 5004
Number of extensions: 53662
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)