BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0830 (670 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.35 SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13... 26 4.3 SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 25 7.5 SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 25 7.5 SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 9.9 SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil... 25 9.9 SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 25 9.9 >SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 542 Score = 29.9 bits (64), Expect = 0.35 Identities = 11/48 (22%), Positives = 22/48 (45%) Frame = +1 Query: 85 WNCKFVHYYDCILYFYNHKFRQDYTIKNINKDKQYLIYSQFDNRRQEQ 228 W C + + ++ FR+ Y + NI K +YS ++ +Q + Sbjct: 189 WTCLSIENFGISIHVITKNFREYYKLDNIEHVKDETLYSDLEHGKQSR 236 >SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13|Schizosaccharomyces pombe|chr 2|||Manual Length = 157 Score = 26.2 bits (55), Expect = 4.3 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = -3 Query: 587 KEWRCEHFTRTRGHRPGVSR*IRIILPAFITNKSEVKNVFIY 462 KEW E RGH+ + R + +LP +K ++IY Sbjct: 86 KEWTMEEMAAKRGHKDLLRRAVGGMLPRNKLWDRRMKRLYIY 127 >SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schizosaccharomyces pombe|chr 1|||Manual Length = 607 Score = 25.4 bits (53), Expect = 7.5 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = +3 Query: 504 CR*YDSNLPAYARSMTSC 557 CR YDS++P Y S C Sbjct: 478 CRRYDSSMPTYEESSHEC 495 >SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosaccharomyces pombe|chr 1|||Manual Length = 618 Score = 25.4 bits (53), Expect = 7.5 Identities = 14/50 (28%), Positives = 22/50 (44%) Frame = -1 Query: 484 KSRMFLSIYILIREAKTLYPFLRKLRGRRSMKFSTFIKNIEKKCTMLIFF 335 K+ FLS+ + + K K + +K T + N K CT+ FF Sbjct: 249 KNEPFLSVVFIYPQIKPHLLSCLKNTHQELIKLETEVYNATKNCTLFQFF 298 >SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 1085 Score = 25.0 bits (52), Expect = 9.9 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +1 Query: 121 LYFYNHKFRQDYTIKNINKDKQYLIYSQFDNRRQEQ 228 L +YN RQ N+N +K I+S + +EQ Sbjct: 226 LSYYNGSVRQASMNNNVNNNKSKDIWSSSNTEEREQ 261 >SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 195 Score = 25.0 bits (52), Expect = 9.9 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = +2 Query: 566 NVRTSIPCGWFTIQYTD*NNESSFVFF 646 N+ S+ CG+ + YT NN S +F Sbjct: 35 NLAKSMLCGFIHVSYTSPNNTSLTTYF 61 >SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual Length = 462 Score = 25.0 bits (52), Expect = 9.9 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = -3 Query: 590 HKEWRCEHFTRTRGHRPGVSR*IRII 513 H EW EH R + P + R IR++ Sbjct: 248 HTEWNLEHIPRLKLVTPALMRPIRML 273 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,656,116 Number of Sequences: 5004 Number of extensions: 53662 Number of successful extensions: 120 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 120 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 305854096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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