Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0830
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1276 + 25811020-25811512,25812134-25812541,25814682-258148...    31   1.1  

>08_02_1276 +
           25811020-25811512,25812134-25812541,25814682-25814878,
           25815412-25815575,25815960-25816056,25816102-25816179,
           25817840-25817919,25817961-25818082,25818203-25818276
          Length = 570

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 486 RFICNECR*YDSNLPAYARSMTSCAREMFAPPFLVAGSRYN 608
           RF+ NE     S +  YARS +S ++ +  P F VA  +YN
Sbjct: 267 RFVENEPFEQGSRVEIYARSRSSLSKLLQVPTFQVADGKYN 307


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,684,659
Number of Sequences: 37544
Number of extensions: 282173
Number of successful extensions: 455
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)