Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0830
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1308| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)                  31   0.64 
SB_33427| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_39591| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_21492| Best HMM Match : Ion_trans (HMM E-Value=1.3e-05)             29   3.4  

>SB_1308| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)
          Length = 352

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 24/78 (30%), Positives = 32/78 (41%)
 Frame = -1

Query: 448 REAKTLYPFLRKLRGRRSMKFSTFIKNIEKKCTMLIFFLNNA*KIH*INKENITHTTYHV 269
           R    +YPF  K +G+R       I      C M   FLNN   I+  N     +     
Sbjct: 124 RYMSVIYPFKGKPKGKRKYAVLALIWITAVLCAMPA-FLNNKVVIYNTNTGRTLNLCVEE 182

Query: 268 FDAHTMHTIYCQTFVLDV 215
           FD++   TIY   F+L V
Sbjct: 183 FDSYKSRTIY-SLFLLSV 199


>SB_33427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 648 KKKTKELSLF*SVYCIVNQPQGMEVRTFHAHTRSSTGRKQV 526
           KKK K+ S+  S   ++N PQG   R F     +STGR +V
Sbjct: 444 KKKHKQTSVNFSALHLINDPQGFSERLF-KQLEASTGRFEV 483


>SB_39591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 448 REAKTLYPFLRKLRGRRSMKFSTFIKNIEKKCTMLIFFL 332
           RE  T Y  L K+R    + + +F   +E   T L FF+
Sbjct: 165 REETTFYEMLEKIRANGGLTYRSFFDYVEIDATALNFFM 203


>SB_21492| Best HMM Match : Ion_trans (HMM E-Value=1.3e-05)
          Length = 1130

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 304 NKENITHTTYHVFDAH--TMHTIYCQTFVLDVCCQIESRLNIV 182
           +KE I H TY  F     T+HT +    +LDV  + ++ LN++
Sbjct: 829 DKELILHLTYFGFGVLGLTVHTFFYSVLLLDVIFREDTLLNVI 871


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,216,342
Number of Sequences: 59808
Number of extensions: 384409
Number of successful extensions: 930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)