Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0830
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-3|AAK26147.1|  536|Caenorhabditis elegans Hypothetical ...    28   5.2  
U56961-3|AAK39294.1|  634|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z82057-5|CAB04861.3|  325|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z81142-11|CAB03512.3|  325|Caenorhabditis elegans Hypothetical p...    27   9.1  
AL132863-5|CAB60571.1|  275|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AC090999-3|AAK26147.1|  536|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.7 protein.
          Length = 536

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 215 DVKNKSLTINSMHGVCVKYMVC 280
           D   K +TIN M+GVCVK   C
Sbjct: 136 DGSGKLVTINQMNGVCVKNSKC 157


>U56961-3|AAK39294.1|  634|Caenorhabditis elegans Hypothetical
           protein T19D7.4 protein.
          Length = 634

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 103 HYYDCILYFYNHKFRQDYTIKNINKDKQ 186
           H +D ILYFYN K  +D T   + K  Q
Sbjct: 492 HIWDVILYFYNLKTGRDTTDAPVRKLSQ 519


>Z82057-5|CAB04861.3|  325|Caenorhabditis elegans Hypothetical
           protein ZK1037.11 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 32  TIIITRGPAVVEIRL*LIGIVSLYTIMIVFY 124
           T+++       E+   LIGI S+YT ++VFY
Sbjct: 108 TVVVIIIAITNEVNELLIGIFSIYTFIVVFY 138


>Z81142-11|CAB03512.3|  325|Caenorhabditis elegans Hypothetical
           protein ZK1037.11 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 32  TIIITRGPAVVEIRL*LIGIVSLYTIMIVFY 124
           T+++       E+   LIGI S+YT ++VFY
Sbjct: 108 TVVVIIIAITNEVNELLIGIFSIYTFIVVFY 138


>AL132863-5|CAB60571.1|  275|Caenorhabditis elegans Hypothetical
           protein Y37H2A.9 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
 Frame = -1

Query: 574 ANISRAHEVIDRA*AGKFESYYLHSLQINRKSRMFLSI-YILIREAKTLYPF---LRKLR 407
           AN+  +HEV  +A  G++++  + +L +N+       + Y L  E K   PF   +++L 
Sbjct: 54  ANLLSSHEVHYQALGGEYKTLVIKALTLNQTKISVNGVEYSLGTENKFKAPFTLAMKQLE 113

Query: 406 GRR 398
           GRR
Sbjct: 114 GRR 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,744,389
Number of Sequences: 27780
Number of extensions: 302892
Number of successful extensions: 667
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)