Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0830
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12650.1 68414.m01469 expressed protein similar to KED (GI:80...    34   0.074
At2g25350.1 68415.m03032 phox (PX) domain-containing protein wea...    27   8.5  

>At1g12650.1 68414.m01469 expressed protein similar to KED
           (GI:8096269) [Nicotiana tabacum]; similar to rRNA
           processing protein EBP2 (SP:P36049) [Saccharomyces
           cerevisiae]
          Length = 248

 Score = 34.3 bits (75), Expect = 0.074
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = -1

Query: 637 KRALVVLVSILYREPATRNGGANISRAHEVIDR--A*AGKFESYYLHSLQINRKSRMFLS 464
           K  L  +  +L  EP+T+N GA I   H+  +R  A  GK   YYL   +I +++   + 
Sbjct: 155 KNQLTYVEKMLKYEPSTQNKGAAILTEHKKKEREAAKEGK-RPYYLKKSEIRKQT--LIE 211

Query: 463 IYILIREAKTLYPFLRKLRGRRSMKFSTFI 374
            Y  ++E+  L  +L K R + + K   F+
Sbjct: 212 KYNSLKESGKLTSYLDKRRKKNATKDHRFM 241


>At2g25350.1 68415.m03032 phox (PX) domain-containing protein weak
           similarity to SP|Q9UTK5 Abnormal long morphology protein
           1 (Sp8) {Schizosaccharomyces pombe}; contains Pfam
           profile PF00787: PX domain
          Length = 643

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -1

Query: 583 NGGANISRAHEVIDRA*AGKFESYYLHSLQINRKSRMFLSIYILIREAKTL 431
           +G + IS +HE++    A K +   L    +  +++    I +L+RE K+L
Sbjct: 483 SGNSTISESHELLQEMDATKQQLEDLSRRYVELEAKSKADIKVLVREVKSL 533


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,194,251
Number of Sequences: 28952
Number of extensions: 250492
Number of successful extensions: 457
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)