BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0827 (552 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 32 0.049 SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 29 0.46 SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 27 1.4 SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 27 1.8 SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 27 1.8 SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 4.2 SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.4 SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 7.4 SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 25 9.8 SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 25 9.8 SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 25 9.8 SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 25 9.8 SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 25 9.8 >SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual Length = 307 Score = 32.3 bits (70), Expect = 0.049 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = -1 Query: 306 SQRYKLAVCFYGIKTMESTC--ALPTPAPSPLESAVFNFSNCSTGK 175 +Q ++ +C Y K + C A PTPA +P E V + C++GK Sbjct: 176 TQTQEVPLCKYADKCSRANCIFAHPTPAAAPGEGMVLSSEMCASGK 221 >SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 743 Score = 29.1 bits (62), Expect = 0.46 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%) Frame = -2 Query: 194 PTAPPANQFYSPR------RRSFLNVGPPAHIRPDASS*V-SARKSVDESI 63 PTA P SP +R +NVGPP ++RP A S + R+S+ + + Sbjct: 555 PTAMPHPNITSPSPSISVTQRPAVNVGPPPYVRPSAPSKLPDTRQSIGDPL 605 >SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr 2|||Manual Length = 397 Score = 27.5 bits (58), Expect = 1.4 Identities = 17/75 (22%), Positives = 29/75 (38%) Frame = -2 Query: 263 LWNQRVRFRPQHHLHSNPPFSIFPTAPPANQFYSPRRRSFLNVGPPAHIRPDASS*VSAR 84 L++ RF + H HS PP ++ A P R N + + P +S A Sbjct: 315 LFSDDSRFHSKIHTHSTPPSQMYSAASHFRYRSDPSTRHVSNSTNKSSLHPSPTSLRVAH 374 Query: 83 KSVDESIALYCRDFP 39 + + + + FP Sbjct: 375 PIIPQRASPASQSFP 389 >SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 571 Score = 27.1 bits (57), Expect = 1.8 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = -2 Query: 236 PQHHLHSNPPFSIFP 192 P H++ +PPFS+FP Sbjct: 125 PPHYVQPHPPFSVFP 139 >SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1009 Score = 27.1 bits (57), Expect = 1.8 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -2 Query: 416 RHFRGRGEHLPKARPAGLERVPVVSHRSPSQL 321 R ++ RG HL K P G+ V+H PS+L Sbjct: 133 RAYQSRGHHLAKLDPLGIN----VNHNRPSEL 160 >SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Schizosaccharomyces pombe|chr 1|||Manual Length = 1995 Score = 25.8 bits (54), Expect = 4.2 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -2 Query: 269 SRLWNQRVRFRPQHHLHSNPPFSIFPTAPPANQFYSP 159 S+ +N++ F+P+ SNPP S+ PP+ Q +P Sbjct: 622 SQNYNRQYSFQPRPATPSNPPRSL---PPPSGQVNAP 655 >SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 115 Score = 25.0 bits (52), Expect = 7.4 Identities = 13/45 (28%), Positives = 20/45 (44%) Frame = -2 Query: 275 MASRLWNQRVRFRPQHHLHSNPPFSIFPTAPPANQFYSPRRRSFL 141 + S LWN + H L++NP +F T + + SFL Sbjct: 3 LTSVLWNFVAKLAVDHGLNTNPD-QVFQTVENVGKSFEKYETSFL 46 >SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual Length = 2410 Score = 25.0 bits (52), Expect = 7.4 Identities = 12/41 (29%), Positives = 19/41 (46%) Frame = +2 Query: 47 HGSTMLSIRQLIFLLILNYSHRALCAPVAQHSETNDASENK 169 HG L R+ + L L H AP ++ E + ++NK Sbjct: 2 HGLQGLCFRRAVIALALLLFHSVFAAPYSEDEEPWNLNQNK 42 >SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharomyces pombe|chr 1|||Manual Length = 395 Score = 24.6 bits (51), Expect = 9.8 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +2 Query: 17 FQNSVTYAGNHGSTMLSIRQLIFLLILNYSHRALCAPVAQHSETNDASE 163 +Q++ Y G GST +SI L L Y R + P Q E +D E Sbjct: 103 YQSNAVYEGTAGSTGISIAML--CCSLGYDSR-IYMPSDQSKEKSDILE 148 >SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizosaccharomyces pombe|chr 3|||Manual Length = 640 Score = 24.6 bits (51), Expect = 9.8 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = -1 Query: 237 TPAPSPLESAVFNFSNCSTGKSVLFSEASFVS 142 +PAP S + N S STGKS++ SE ++++ Sbjct: 365 SPAPYSPTSVISNHS--STGKSLVISEWAYLA 394 >SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual Length = 438 Score = 24.6 bits (51), Expect = 9.8 Identities = 19/66 (28%), Positives = 30/66 (45%) Frame = -2 Query: 272 ASRLWNQRVRFRPQHHLHSNPPFSIFPTAPPANQFYSPRRRSFLNVGPPAHIRPDASS*V 93 +S+L N+R H HS P S++P P +Q P S N+ ++P S Sbjct: 188 SSKLSNRRPAL---HSFHSAPANSLYPLPTPTSQL--PSNLSSNNLFQSDSLKPSMVSSH 242 Query: 92 SARKSV 75 ++ K V Sbjct: 243 TSTKPV 248 >SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizosaccharomyces pombe|chr 2|||Manual Length = 426 Score = 24.6 bits (51), Expect = 9.8 Identities = 11/32 (34%), Positives = 15/32 (46%) Frame = -2 Query: 260 WNQRVRFRPQHHLHSNPPFSIFPTAPPANQFY 165 WNQ +P + NP + + APPA Y Sbjct: 106 WNQAQTAQPPQPVQPNPYGAPYQQAPPAGAPY 137 >SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces pombe|chr 1|||Manual Length = 802 Score = 24.6 bits (51), Expect = 9.8 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = -1 Query: 303 QRYKLAVCFYGIKTMESTCALPTPAPSPLES 211 Q+YK AVCF + T L P P P ES Sbjct: 321 QQYKRAVCFSKFGIVMDTKGLTLP-PVPTES 350 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,273,655 Number of Sequences: 5004 Number of extensions: 46159 Number of successful extensions: 172 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 172 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 229961028 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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