Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0827
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          32   0.049
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    29   0.46 
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    27   1.4  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    27   1.8  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    27   1.8  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   4.2  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.4  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.4  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    25   9.8  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   9.8  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   9.8  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    25   9.8  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    25   9.8  

>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 32.3 bits (70), Expect = 0.049
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 306 SQRYKLAVCFYGIKTMESTC--ALPTPAPSPLESAVFNFSNCSTGK 175
           +Q  ++ +C Y  K   + C  A PTPA +P E  V +   C++GK
Sbjct: 176 TQTQEVPLCKYADKCSRANCIFAHPTPAAAPGEGMVLSSEMCASGK 221


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
 Frame = -2

Query: 194 PTAPPANQFYSPR------RRSFLNVGPPAHIRPDASS*V-SARKSVDESI 63
           PTA P     SP       +R  +NVGPP ++RP A S +   R+S+ + +
Sbjct: 555 PTAMPHPNITSPSPSISVTQRPAVNVGPPPYVRPSAPSKLPDTRQSIGDPL 605


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/75 (22%), Positives = 29/75 (38%)
 Frame = -2

Query: 263 LWNQRVRFRPQHHLHSNPPFSIFPTAPPANQFYSPRRRSFLNVGPPAHIRPDASS*VSAR 84
           L++   RF  + H HS PP  ++  A        P  R   N    + + P  +S   A 
Sbjct: 315 LFSDDSRFHSKIHTHSTPPSQMYSAASHFRYRSDPSTRHVSNSTNKSSLHPSPTSLRVAH 374

Query: 83  KSVDESIALYCRDFP 39
             + +  +   + FP
Sbjct: 375 PIIPQRASPASQSFP 389


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 236 PQHHLHSNPPFSIFP 192
           P H++  +PPFS+FP
Sbjct: 125 PPHYVQPHPPFSVFP 139


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 416 RHFRGRGEHLPKARPAGLERVPVVSHRSPSQL 321
           R ++ RG HL K  P G+     V+H  PS+L
Sbjct: 133 RAYQSRGHHLAKLDPLGIN----VNHNRPSEL 160


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 269 SRLWNQRVRFRPQHHLHSNPPFSIFPTAPPANQFYSP 159
           S+ +N++  F+P+    SNPP S+    PP+ Q  +P
Sbjct: 622 SQNYNRQYSFQPRPATPSNPPRSL---PPPSGQVNAP 655


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 275 MASRLWNQRVRFRPQHHLHSNPPFSIFPTAPPANQFYSPRRRSFL 141
           + S LWN   +    H L++NP   +F T     + +     SFL
Sbjct: 3   LTSVLWNFVAKLAVDHGLNTNPD-QVFQTVENVGKSFEKYETSFL 46


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 47  HGSTMLSIRQLIFLLILNYSHRALCAPVAQHSETNDASENK 169
           HG   L  R+ +  L L   H    AP ++  E  + ++NK
Sbjct: 2   HGLQGLCFRRAVIALALLLFHSVFAAPYSEDEEPWNLNQNK 42


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 17  FQNSVTYAGNHGSTMLSIRQLIFLLILNYSHRALCAPVAQHSETNDASE 163
           +Q++  Y G  GST +SI  L     L Y  R +  P  Q  E +D  E
Sbjct: 103 YQSNAVYEGTAGSTGISIAML--CCSLGYDSR-IYMPSDQSKEKSDILE 148


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 237 TPAPSPLESAVFNFSNCSTGKSVLFSEASFVS 142
           +PAP    S + N S  STGKS++ SE ++++
Sbjct: 365 SPAPYSPTSVISNHS--STGKSLVISEWAYLA 394


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = -2

Query: 272 ASRLWNQRVRFRPQHHLHSNPPFSIFPTAPPANQFYSPRRRSFLNVGPPAHIRPDASS*V 93
           +S+L N+R      H  HS P  S++P   P +Q   P   S  N+     ++P   S  
Sbjct: 188 SSKLSNRRPAL---HSFHSAPANSLYPLPTPTSQL--PSNLSSNNLFQSDSLKPSMVSSH 242

Query: 92  SARKSV 75
           ++ K V
Sbjct: 243 TSTKPV 248


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 260 WNQRVRFRPQHHLHSNPPFSIFPTAPPANQFY 165
           WNQ    +P   +  NP  + +  APPA   Y
Sbjct: 106 WNQAQTAQPPQPVQPNPYGAPYQQAPPAGAPY 137


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 303 QRYKLAVCFYGIKTMESTCALPTPAPSPLES 211
           Q+YK AVCF     +  T  L  P P P ES
Sbjct: 321 QQYKRAVCFSKFGIVMDTKGLTLP-PVPTES 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,655
Number of Sequences: 5004
Number of extensions: 46159
Number of successful extensions: 172
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)