Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0827
(552 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13211| Best HMM Match : Extensin_2 (HMM E-Value=0.0053) 29 1.9
SB_7984| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 29 3.3
SB_27764| Best HMM Match : RVT_1 (HMM E-Value=3.99931e-42) 29 3.3
SB_24072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017) 29 3.3
SB_17949| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.4) 28 4.4
SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89) 28 4.4
SB_16491| Best HMM Match : MutS_V (HMM E-Value=8.2e-11) 28 4.4
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_23902| Best HMM Match : Pkinase (HMM E-Value=2.29813e-43) 28 5.8
SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12) 28 5.8
SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2) 28 5.8
SB_58606| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_46639| Best HMM Match : G_glu_transpept (HMM E-Value=0) 27 7.7
SB_44362| Best HMM Match : Transposase_24 (HMM E-Value=6.3) 27 7.7
SB_8214| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13) 27 7.7
SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013) 27 7.7
>SB_13211| Best HMM Match : Extensin_2 (HMM E-Value=0.0053)
Length = 545
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +2
Query: 314 HASADSVNGEKPRVHAQAQLDVPSEGVHRVLENDGSHVSVHDVTSPPTAAAYEVTPKVFH 493
H +V P +H + + G + N G+H VTSPPT Y P V H
Sbjct: 244 HVPVINVPSHVPAIHVRPHVPAVHLGPPIPIVNAGNHFPAVHVTSPPT--IYHRPPIVIH 301
>SB_7984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 395 EHLPKARPAGLERVPVVSHRSPSQLKRV-ALVRDTSSPFAFMASRLWNQ 252
EH+PK++P + P + H+ S LK+ V+ + + A R +N+
Sbjct: 323 EHIPKSKPRNVSDYPWIDHQLRSLLKKKDGRVKKANKTGSLAAERKYNE 371
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 437 DVTSPPTAAAYEVTPKVFHGAARLSSQARRPSA 535
DVTS P+ A +VTPK A +++ +A SA
Sbjct: 1880 DVTSKPSTDAAKVTPKTSTDAVKVTPKASNDSA 1912
>SB_27764| Best HMM Match : RVT_1 (HMM E-Value=3.99931e-42)
Length = 715
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 395 EHLPKARPAGLERVPVVSHRSPSQLKRVALVRDTSSPFAFMAS-RLWNQRVRFRPQ 231
EH+PK++P + P + H S LK+ R ++ +A+ R +N+ R Q
Sbjct: 274 EHIPKSKPRNVSDYPWIDHELRSLLKKKDAQRKKANKTGSLAAERKYNELRRAAKQ 329
>SB_24072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 822
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 395 EHLPKARPAGLERVPVVSHRSPSQLKRVALVRDTSSPFAFMAS-RLWNQRVRFRPQ 231
EH+PK++P + P + H S LK+ R ++ +A+ R +N+ R Q
Sbjct: 267 EHIPKSKPRNVSDYPWIDHELRSLLKKKDAQRKKANKTGSLAAERKYNELRRAAKQ 322
>SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
Length = 1675
Score = 28.7 bits (61), Expect = 3.3
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = -2
Query: 356 VPVVSHRSPS--QLKRVALVRDTSS-PFAFMASRLWNQRVRFRPQHHLHSNPPFSIFPTA 186
+P+ SH SPS Q+ + + R + + + SR + RPQ+ L ++
Sbjct: 1567 IPLKSHNSPSPAQVTQCPIFRPSHTIHHPPLRSRNVRYPAQVRPQYPLQASLNVKKGARV 1626
Query: 185 PPANQFYSPRRRS-FLNVGPPAHIR 114
P QF PRRR + P H+R
Sbjct: 1627 PYGGQFRLPRRRERTMQQRPRPHLR 1651
>SB_17949| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.4)
Length = 292
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 395 EHLPKARPAGLERVPVVSHRSPSQLKRVALVRDTSSPFAFMAS-RLWNQRVRFRPQ 231
EH+PK++P + P + H S LK+ R ++ +A+ R +N+ R Q
Sbjct: 119 EHIPKSKPRNVSDYPWIDHELRSLLKKKDAQRKKANRTGSLAAERKYNELRRAAKQ 174
>SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)
Length = 1354
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 395 EHLPKARPAGLERVPVVSHRSPSQLKRV-ALVRDTSSPFAFMASRLWNQRVRFRPQHHL 222
EH+PK++P + P + H S LK+ A + + + A R +N+ +R +H L
Sbjct: 627 EHIPKSKPRNVSDYPWIDHELRSLLKKKDAQHKKANKTGSLAAERKYNE-LRRAAKHML 684
>SB_16491| Best HMM Match : MutS_V (HMM E-Value=8.2e-11)
Length = 877
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 395 EHLPKARPAGLERVPVVSHRSPSQLKRV-ALVRDTSSPFAFMASRLWNQRVRFRPQ 231
EH+PK++P + P + H S LK+ A + + + A R +N+ R Q
Sbjct: 815 EHIPKSKPRNVSDYPWIDHELRSLLKKKDAQRKKANKTRSLAAERKYNELRRAAKQ 870
>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 410 NDGSHVSVHDVTSPPTAAAYEVTPKVFHGAA 502
N GS SV +SP ++A E P V+H A
Sbjct: 1699 NQGSAPSVSQGSSPASSATPESAPSVYHAGA 1729
>SB_23902| Best HMM Match : Pkinase (HMM E-Value=2.29813e-43)
Length = 1602
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 389 LPKARPAGLERVPVVSHRSPSQLKRVALVRDTSSPFAFMASRLWNQ 252
LP + PA R +P+ LK LV+DT ++ + WNQ
Sbjct: 1229 LPASEPASTLRRSTRLKTTPTHLKDYLLVKDTPWNWSEAHEKSWNQ 1274
>SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12)
Length = 769
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 380 PSEGVHRVLENDGSHVSVHD--VTSPPTAAAYEVTPKVFHGAARLSSQARRPSAPQ 541
P+ GV L + V+ V SP YE+TP+ + + Q+RRP PQ
Sbjct: 208 PAVGVTVTLRREEQPVNTGTIGVPSPAKQRQYEITPRKPNLPQTHTPQSRRPEEPQ 263
>SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)
Length = 2527
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 276 YGIKTMESTCALPTPAPSPLESAVFNFSNCSTGKSVLFSEA-SFVSECW 133
Y + S + T PSP + A + CS SVL S A + V+E W
Sbjct: 1833 YSVFWSNSCAGVKTTPPSPRDPAKYTI-YCSEAASVLLSMAKAMVNEAW 1880
>SB_58606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 395 EHLPKARPAGLERVPVVSHRSPSQLKR 315
EH+PK++P + P + H S LK+
Sbjct: 89 EHIPKSKPRNVNDYPWIDHELSSLLKK 115
>SB_46639| Best HMM Match : G_glu_transpept (HMM E-Value=0)
Length = 566
Score = 27.5 bits (58), Expect = 7.7
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Frame = +2
Query: 341 EKPRVHAQAQLDVPSEGVHRVLENDGSHVSV------HDVTSPPTAAAYEVTPKVFHGAA 502
E+PRVH Q DV R + D +HV H V + A + +HG
Sbjct: 491 ERPRVHHQFSPDVVEAEGERFAKYDDTHVISYLRQIGHKVNTTGFPVADVNVAENYHGTM 550
Query: 503 RLSSQARR 526
R S +RR
Sbjct: 551 RSHSDSRR 558
>SB_44362| Best HMM Match : Transposase_24 (HMM E-Value=6.3)
Length = 306
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 395 EHLPKARPAGLERVPVVSHRSPSQLKR 315
EH+PK++P + P + H S LK+
Sbjct: 128 EHIPKSKPRNVNDYPWIDHELRSLLKK 154
>SB_8214| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 395 EHLPKARPAGLERVPVVSHRSPSQLKR 315
EH+PK++P + P + H S LK+
Sbjct: 129 EHIPKSKPRNVSDYPWIDHELRSLLKK 155
>SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13)
Length = 752
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 350 VVSHRSPSQLKRVALVRDTSSPF 282
++S +P Q KR +L++DT +PF
Sbjct: 21 IISTGNPHQRKRTSLLKDTHNPF 43
>SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)
Length = 1105
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/80 (22%), Positives = 33/80 (41%)
Frame = +2
Query: 308 EQHASADSVNGEKPRVHAQAQLDVPSEGVHRVLENDGSHVSVHDVTSPPTAAAYEVTPKV 487
+Q S+ V G + + + G+H L + VH+ + PP ++
Sbjct: 92 KQQKSSQFVKGSSSKAYRNDKRHCA--GIHEDLTDYNVAAIVHNASPPPRPTSFGTANFQ 149
Query: 488 FHGAARLSSQARRPSAPQGH 547
F+ RL S + PS+ + H
Sbjct: 150 FNEHRRLLSPYKLPSSNERH 169
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,078,026
Number of Sequences: 59808
Number of extensions: 383309
Number of successful extensions: 1208
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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