Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0827
(552 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF278765-1|AAK01082.1| 2406|Homo sapiens kappa B and V(D)J recom... 31 2.0
AY884293-1|AAX84184.1| 1117|Homo sapiens cytospin A protein. 31 2.7
AB002374-1|BAA21574.1| 885|Homo sapiens KIAA0376 protein. 31 2.7
L21990-1|AAA60301.1| 464|Homo sapiens spiceosomal protein protein. 30 6.2
BC015804-1|AAH15804.1| 481|Homo sapiens SF3A2 protein protein. 30 6.2
BC009903-1|AAH09903.1| 464|Homo sapiens splicing factor 3a, sub... 30 6.2
BC004434-1|AAH04434.1| 464|Homo sapiens splicing factor 3a, sub... 30 6.2
AC005263-1|AAC25613.1| 464|Homo sapiens SP62_HUMAN protein. 30 6.2
BC029566-1|AAH29566.1| 189|Homo sapiens DMRTB1 protein protein. 29 8.2
AL365445-2|CAI22836.1| 342|Homo sapiens DMRT-like family B with... 29 8.2
AK057273-1|BAB71407.1| 342|Homo sapiens protein ( Homo sapiens ... 29 8.2
AJ291671-1|CAC40654.1| 336|Homo sapiens doublesex-mab-3 (DM) do... 29 8.2
>AF278765-1|AAK01082.1| 2406|Homo sapiens kappa B and V(D)J
recombination signal sequences binding protein protein.
Length = 2406
Score = 31.5 bits (68), Expect = 2.0
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Frame = -2
Query: 383 KARPAGLERVPVVSHRSPS-QLKRVALVRDTSSPFAFMASRLWNQRVRFRPQHHLHSNPP 207
+ +P G + V SH + +++R A SP ++ + R + L P
Sbjct: 967 RPKPLGTHMLTVPSHHPHAREMRRSA---SEQSPNVSHSAHMTETRSKSFDYGSLSLTGP 1023
Query: 206 FSIFPTAPPANQFYSPRRRSFLNVGPPAHIRPDASS*VSARKSVDES 66
+ P APPA + RR+ FL V P+ RP S A K ES
Sbjct: 1024 SAPAPVAPPAGEAPPERRKCFL-VRSPSLSRPPESELEVAPKGRQES 1069
>AY884293-1|AAX84184.1| 1117|Homo sapiens cytospin A protein.
Length = 1117
Score = 31.1 bits (67), Expect = 2.7
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Frame = -2
Query: 380 ARPAGLERVPV--------VSHRSPSQLKRVALVRDTSSPFAFMASRLWNQRVRFRPQHH 225
+RPA L RVP VS RS ++KR ++ +SP + MA + PQ
Sbjct: 924 SRPASLPRVPAMESAKTLSVSRRSSEEMKRDISAQEGASPASLMAMGTTS------PQLS 977
Query: 224 LHSNPPFSIFPT 189
L S+P S+ PT
Sbjct: 978 LSSSPTASVTPT 989
>AB002374-1|BAA21574.1| 885|Homo sapiens KIAA0376 protein.
Length = 885
Score = 31.1 bits (67), Expect = 2.7
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Frame = -2
Query: 380 ARPAGLERVPV--------VSHRSPSQLKRVALVRDTSSPFAFMASRLWNQRVRFRPQHH 225
+RPA L RVP VS RS ++KR ++ +SP + MA + PQ
Sbjct: 768 SRPASLPRVPAMESAKTLSVSRRSSEEMKRDISAQEGASPASLMAMGTTS------PQLS 821
Query: 224 LHSNPPFSIFPT 189
L S+P S+ PT
Sbjct: 822 LSSSPTASVTPT 833
>L21990-1|AAA60301.1| 464|Homo sapiens spiceosomal protein protein.
Length = 464
Score = 29.9 bits (64), Expect = 6.2
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Frame = +2
Query: 314 HASADSVNGEKPRVHAQAQ-LDVPSEGVHRVLENDGSHVSVHDVTSPPTAAAYEVTPKVF 490
H V+ P VH A + P+ GVH G H V PP+A + P V
Sbjct: 323 HPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAP--GVHPPAPGVHPPPSAGVHPQAPGVH 380
Query: 491 HGAARLSSQAR--RPSAPQGH 547
A + QA P AP H
Sbjct: 381 PAAPAVHPQAPGVHPPAPGMH 401
>BC015804-1|AAH15804.1| 481|Homo sapiens SF3A2 protein protein.
Length = 481
Score = 29.9 bits (64), Expect = 6.2
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Frame = +2
Query: 314 HASADSVNGEKPRVHAQAQ-LDVPSEGVHRVLENDGSHVSVHDVTSPPTAAAYEVTPKVF 490
H V+ P VH A + P+ GVH G H V PP+A + P V
Sbjct: 323 HPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAP--GVHPPAPGVHPPPSAGVHPQAPGVH 380
Query: 491 HGAARLSSQAR--RPSAPQGH 547
A + QA P AP H
Sbjct: 381 PAAPAVHPQAPGVHPPAPGMH 401
>BC009903-1|AAH09903.1| 464|Homo sapiens splicing factor 3a,
subunit 2, 66kDa protein.
Length = 464
Score = 29.9 bits (64), Expect = 6.2
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Frame = +2
Query: 314 HASADSVNGEKPRVHAQAQ-LDVPSEGVHRVLENDGSHVSVHDVTSPPTAAAYEVTPKVF 490
H V+ P VH A + P+ GVH G H V PP+A + P V
Sbjct: 323 HPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAP--GVHPPAPGVHPPPSAGVHPQAPGVH 380
Query: 491 HGAARLSSQAR--RPSAPQGH 547
A + QA P AP H
Sbjct: 381 PAAPAVHPQAPGVHPPAPGMH 401
>BC004434-1|AAH04434.1| 464|Homo sapiens splicing factor 3a,
subunit 2, 66kDa protein.
Length = 464
Score = 29.9 bits (64), Expect = 6.2
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Frame = +2
Query: 314 HASADSVNGEKPRVHAQAQ-LDVPSEGVHRVLENDGSHVSVHDVTSPPTAAAYEVTPKVF 490
H V+ P VH A + P+ GVH G H V PP+A + P V
Sbjct: 323 HPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAP--GVHPPAPGVHPPPSAGVHPQAPGVH 380
Query: 491 HGAARLSSQAR--RPSAPQGH 547
A + QA P AP H
Sbjct: 381 PAAPAVHPQAPGVHPPAPGMH 401
>AC005263-1|AAC25613.1| 464|Homo sapiens SP62_HUMAN protein.
Length = 464
Score = 29.9 bits (64), Expect = 6.2
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Frame = +2
Query: 314 HASADSVNGEKPRVHAQAQ-LDVPSEGVHRVLENDGSHVSVHDVTSPPTAAAYEVTPKVF 490
H V+ P VH A + P+ GVH G H V PP+A + P V
Sbjct: 323 HPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAP--GVHPPAPGVHPPPSAGVHPQAPGVH 380
Query: 491 HGAARLSSQAR--RPSAPQGH 547
A + QA P AP H
Sbjct: 381 PAAPAVHPQAPGVHPPAPGMH 401
>BC029566-1|AAH29566.1| 189|Homo sapiens DMRTB1 protein protein.
Length = 189
Score = 29.5 bits (63), Expect = 8.2
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -2
Query: 242 FRPQHHLHSNPP-FSIFPTAPPANQFYSPRRRSFLNVGPPAHIRPDASS 99
F+P ++L PP P PP QF P S L+ PP P SS
Sbjct: 105 FQPSYYLPPPPPPLPPLPPLPPQPQFLPPGYLSALHFLPPPPPPPPPSS 153
>AL365445-2|CAI22836.1| 342|Homo sapiens DMRT-like family B with
proline-rich C-terminal, 1 protein.
Length = 342
Score = 29.5 bits (63), Expect = 8.2
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -2
Query: 242 FRPQHHLHSNPP-FSIFPTAPPANQFYSPRRRSFLNVGPPAHIRPDASS 99
F+P ++L PP P PP QF P S L+ PP P SS
Sbjct: 258 FQPSYYLPPPPPPLPPLPPLPPQPQFLPPGYLSALHFLPPPPPPPPPSS 306
>AK057273-1|BAB71407.1| 342|Homo sapiens protein ( Homo sapiens
cDNA FLJ32711 fis, clone TESTI2000707, weakly similar to
DOUBLESEX PROTEIN, MALE-SPECIFIC. ).
Length = 342
Score = 29.5 bits (63), Expect = 8.2
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -2
Query: 242 FRPQHHLHSNPP-FSIFPTAPPANQFYSPRRRSFLNVGPPAHIRPDASS 99
F+P ++L PP P PP QF P S L+ PP P SS
Sbjct: 258 FQPSYYLPPPPPPLPPLPPLPPQPQFLPPGYLSALHFLPPPPPPPPPSS 306
>AJ291671-1|CAC40654.1| 336|Homo sapiens doublesex-mab-3 (DM)
domain protein.
Length = 336
Score = 29.5 bits (63), Expect = 8.2
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -2
Query: 242 FRPQHHLHSNPP-FSIFPTAPPANQFYSPRRRSFLNVGPPAHIRPDASS 99
F+P ++L PP P PP QF P S L+ PP P SS
Sbjct: 252 FQPSYYLPPPPPPLPPLPPLPPQPQFLPPGYLSALHFLPPPPPPPPPSS 300
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,497,916
Number of Sequences: 237096
Number of extensions: 1807902
Number of successful extensions: 5597
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5593
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5477474182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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