Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0827
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    26   0.29 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   2.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   2.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.6  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 64  IDSSTDFLADTQLLASGLMCAGGPTFRNERRL 159
           ID ST++      L  GL+ + G  +RN R+L
Sbjct: 109 IDKSTEYRFFKPWLGDGLLISTGQKWRNHRKL 140


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 284 TASLYL*LEQHASADSVNGEKPRVHAQAQLDVPSEGVHRVLENDGS 421
           T +LY       S   VN E+ R     Q D+  EGV  +L+   S
Sbjct: 262 TNNLYYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQNILDTQSS 307


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 284 TASLYL*LEQHASADSVNGEKPRVHAQAQLDVPSEGVHRVLENDGS 421
           T +LY       S   VN E+ R     Q D+  EGV  +L+   S
Sbjct: 262 TNNLYYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQNILDTQSS 307


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 284 TASLYL*LEQHASADSVNGEKPRVHAQAQLDVPSEGVHRVLENDGS 421
           T +LY       S   VN E+ R     Q D+  EGV  +L+   S
Sbjct: 262 TNNLYYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQNILDTQSS 307


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 380  PSEGVHRVLENDGSHVSVHDVTSPPTAAAYE 472
            P E +   + NDG   S+ DV++P     Y+
Sbjct: 914  PGELLSSCVSNDGGCSSLVDVSTPVNKKVYK 944


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,411
Number of Sequences: 438
Number of extensions: 3279
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)