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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0827
         (552 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    31   0.39 
At3g08790.1 68416.m01021 VHS domain-containing protein / GAT dom...    31   0.68 
At1g03103.1 68414.m00286 protease inhibitor/seed storage/lipid t...    31   0.68 
At2g35670.1 68415.m04375 transcription factor, putative / fertil...    30   0.89 
At3g24690.1 68416.m03100 expressed protein similar to hypothetic...    29   1.6  
At5g07940.1 68418.m00920 expressed protein                             28   4.8  
At4g29310.1 68417.m04190 expressed protein                             28   4.8  
At3g54590.1 68416.m06040 proline-rich extensin-like family prote...    28   4.8  
At4g13390.1 68417.m02092 proline-rich extensin-like family prote...    27   6.3  
At3g18360.1 68416.m02335 VQ motif-containing protein contains PF...    27   6.3  
At2g24980.1 68415.m02987 proline-rich extensin-like family prote...    27   6.3  
At5g09280.1 68418.m01075 pectate lyase family protein similar to...    27   8.3  
At3g57860.1 68416.m06450 expressed protein                             27   8.3  
At3g43610.1 68416.m04640 tubulin family protein                        27   8.3  
At3g10720.2 68416.m01291 pectinesterase, putative contains simil...    27   8.3  

>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 239 RPQHHL-HSNPPFSIFPTAPPANQFYSP 159
           +P HH+ HS PP S  PT+PP +   SP
Sbjct: 438 QPHHHVVHSPPPASSPPTSPPVHSTPSP 465


>At3g08790.1 68416.m01021 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to
           HGF-regulated tyrosine kinase substrate [Mus musculus]
           GI:1089781; contains Pfam profiles PF00790: VHS domain,
           PF03127: GAT domain
          Length = 607

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 263 LWNQRVRFRPQHHLHSNPPFSIFPT-APPANQFYSPRRRSFLNVGPP 126
           +WN ++  +P    + N PFS  P  +PPA+  Y  +  + L + PP
Sbjct: 399 VWNLQITQQPSSPAYGNQPFS--PNFSPPASPHYGGQNNNVLALPPP 443


>At1g03103.1 68414.m00286 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           profile PF00234:Protease inhibitor/seed storage/LTP
           family; low similarity to SP:Q42978 Nonspecific
           lipid-transfer protein 2 precursor (LTP 2) {Oryza
           sativa}
          Length = 171

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = -1

Query: 381 GTSSWA*ACTRGFSPFTESAEACCSSQRYKLAVCFYGIKTMESTCALPTPAPSPLESAVF 202
           G+SS + +C R FS   +S+  C  S        FYG K    T AL  P    +++   
Sbjct: 42  GSSSPSWSCCRQFSTVVQSSPECLCSVVNSNESSFYGFK-FNRTLALNLPTACNVQTP-- 98

Query: 201 NFSNCSTGKSV 169
           + S C+TG +V
Sbjct: 99  SPSLCNTGGNV 109


>At2g35670.1 68415.m04375 transcription factor, putative /
           fertilization-independent seed 2 protein (FIS2)
           identical to GB:AF096095
          Length = 632

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +2

Query: 311 QHASADSVNGEKPRVHAQAQLDVPSEGVHRVLENDGSHVSVHDVTSPPTAAAYEVTPKVF 490
           Q    D  N  K       +LD+  + + R  END +HV+  +V+SPP A + E    + 
Sbjct: 87  QRRQRDDSNNVKKLNVLLMELDL--DDLPRGTENDSTHVNDDNVSSPPRAHSSEKISDIL 144

Query: 491 HGAARLSSQARRPSAP 538
                  +++  P  P
Sbjct: 145 TTTQLAIAESSEPKVP 160


>At3g24690.1 68416.m03100 expressed protein similar to hypothetical
           protein GB:AAB61487 from [Arabidopsis thaliana]
          Length = 158

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 404 LENDGSHVSVH-DVTSPPTAAAYEVTPKVFHGAARLSSQARRPSAPQ 541
           + +DG +  V  D TSP + ++  VTP      AR    A++P  PQ
Sbjct: 112 ISDDGINSEVSKDDTSPSSESSQGVTPSPLSRKARRKRNAKKPQIPQ 158


>At5g07940.1 68418.m00920 expressed protein
          Length = 1526

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = -2

Query: 353  PVVSHRSPSQLKRVALVRDTSSPFAFMASRLWNQRVRFRP----QHHLHSNPPFSIFPTA 186
            P+V+  SP Q     ++ D+ S  +    + WNQ  + +P     H L SN   + F   
Sbjct: 994  PLVASSSPQQSSSSGMMSDSPSGISAPQHQFWNQPSKPQPVILRPHPLPSNNMAASFSRQ 1053

Query: 185  PPANQFYS 162
               NQ  S
Sbjct: 1054 EKTNQLSS 1061


>At4g29310.1 68417.m04190 expressed protein
          Length = 424

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 407 ENDGSHVSVHDVTSPPTAAAYEVTPKVFH-GAARLS 511
           E  G  +++HD++  P AAA  +TP V   G+ R+S
Sbjct: 231 ERKGWMITIHDLSGSPVAAASMITPFVASPGSDRVS 266


>At3g54590.1 68416.m06040 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 743

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 236 PQHHLHSNPPFSIFPTAPPANQFYSPRRRSFLNVGPPAHI 117
           P+ H  S PP  ++ + PP   +YSP  + +    PP ++
Sbjct: 564 PKVHYKSPPPPYVYNSPPPP--YYSPSPKVYYKSPPPPYV 601


>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 429

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 236 PQHHLHSNPPFSIFPTAPPANQFYSPRRRSFLNVGPPAHI 117
           P+    S PP  ++ + PP   +YSP  +   N  PP +I
Sbjct: 117 PKVEYKSPPPPYVYSSLPPLT-YYSPSPKVIYNSPPPPYI 155


>At3g18360.1 68416.m02335 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 285

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = -2

Query: 212 PPFSIFPTAPPANQFYSPRRRSFLNVGPPAHIRPDASS*VSARKSVDESIALYCRDF 42
           P F IFP A PA+ F     + F N   P    P+  S  S+  S         RDF
Sbjct: 230 PTFPIFPPANPADNFLC-GNQPFANFDDPLFFAPNMRSSFSSSSSSGFDGLTEFRDF 285


>At2g24980.1 68415.m02987 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 559

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -2

Query: 236 PQHHLHSNPPFSIFPTAPPANQFYSPRRRSFLNVGPPAHI 117
           P+ +  S PP  ++ + PP   +YSP  + +    PP+++
Sbjct: 466 PKVYYKSPPPSYVYSSPPPP--YYSPSPKVYYKSPPPSYV 503


>At5g09280.1 68418.m01075 pectate lyase family protein similar to
           major pollen allergen Cup a 1 SP:Q9SCG9 from [Cupressus
           arizonica]
          Length = 297

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 413 DGSHVSVHDVTSPPTAAAYEVTPKVFHGAARLSSQARRPSAPQG 544
           DG   SVH ++ P     Y  T  + HG      +A  PS+  G
Sbjct: 65  DGRGASVH-ISGPACLIVYRATDVIIHGLKIHDCKAHPPSSVMG 107


>At3g57860.1 68416.m06450 expressed protein
          Length = 243

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 404 GRGEHLPKARPAGLERVPVVSHR 336
           GRG H P   P G E +P+V+ R
Sbjct: 68  GRGGHTPFRLPQGRENMPIVTAR 90


>At3g43610.1 68416.m04640 tubulin family protein
          Length = 1120

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
 Frame = -1

Query: 351 RGFSPFTESAEACCSSQRYKLAVCFYGIKTMESTCALPTP-APSPLESAVFNFSNCSTGK 175
           R FS    S  + CSS R  L     G+   +ST   P P   S L  +V +  NC+   
Sbjct: 508 RWFSEIDASCSSECSSTRDSLEASEVGLLDSQSTLVGPPPNYLSALRFSVASNGNCNQ-N 566

Query: 174 SVLFSEASFVSECWATGAHKA 112
            V  S++ ++         KA
Sbjct: 567 LVQHSDSGYIDNNLVRQGEKA 587


>At3g10720.2 68416.m01291 pectinesterase, putative contains
           similarity to pectinesterase from Vitis vinifera
           GI:15081598, Prunus persica SP|Q43062; contains Pfam
           profile PF01095 pectinesterase
          Length = 619

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = -2

Query: 221 HSNPPFSIFPTAPPANQFYSPRRRSFLNVGPPAHIRPDASS*VSARKSVDESIALYCRDF 42
           HS PP S  P  PP    + P  +      PP  + P     +   +S   S+A     +
Sbjct: 36  HSEPP-SQLPFEPPVESPFFPPSQ------PPIFVPPSQPPSLPPSQSQSPSLACKSTPY 88

Query: 41  PRR*RSSENAVSS 3
           P+  R+  NAV S
Sbjct: 89  PKLCRTILNAVKS 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,335,907
Number of Sequences: 28952
Number of extensions: 265533
Number of successful extensions: 925
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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