Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0827
(552 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 31 0.39
At3g08790.1 68416.m01021 VHS domain-containing protein / GAT dom... 31 0.68
At1g03103.1 68414.m00286 protease inhibitor/seed storage/lipid t... 31 0.68
At2g35670.1 68415.m04375 transcription factor, putative / fertil... 30 0.89
At3g24690.1 68416.m03100 expressed protein similar to hypothetic... 29 1.6
At5g07940.1 68418.m00920 expressed protein 28 4.8
At4g29310.1 68417.m04190 expressed protein 28 4.8
At3g54590.1 68416.m06040 proline-rich extensin-like family prote... 28 4.8
At4g13390.1 68417.m02092 proline-rich extensin-like family prote... 27 6.3
At3g18360.1 68416.m02335 VQ motif-containing protein contains PF... 27 6.3
At2g24980.1 68415.m02987 proline-rich extensin-like family prote... 27 6.3
At5g09280.1 68418.m01075 pectate lyase family protein similar to... 27 8.3
At3g57860.1 68416.m06450 expressed protein 27 8.3
At3g43610.1 68416.m04640 tubulin family protein 27 8.3
At3g10720.2 68416.m01291 pectinesterase, putative contains simil... 27 8.3
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 239 RPQHHL-HSNPPFSIFPTAPPANQFYSP 159
+P HH+ HS PP S PT+PP + SP
Sbjct: 438 QPHHHVVHSPPPASSPPTSPPVHSTPSP 465
>At3g08790.1 68416.m01021 VHS domain-containing protein / GAT
domain-containing protein weak similarity to
HGF-regulated tyrosine kinase substrate [Mus musculus]
GI:1089781; contains Pfam profiles PF00790: VHS domain,
PF03127: GAT domain
Length = 607
Score = 30.7 bits (66), Expect = 0.68
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 263 LWNQRVRFRPQHHLHSNPPFSIFPT-APPANQFYSPRRRSFLNVGPP 126
+WN ++ +P + N PFS P +PPA+ Y + + L + PP
Sbjct: 399 VWNLQITQQPSSPAYGNQPFS--PNFSPPASPHYGGQNNNVLALPPP 443
>At1g03103.1 68414.m00286 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
profile PF00234:Protease inhibitor/seed storage/LTP
family; low similarity to SP:Q42978 Nonspecific
lipid-transfer protein 2 precursor (LTP 2) {Oryza
sativa}
Length = 171
Score = 30.7 bits (66), Expect = 0.68
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = -1
Query: 381 GTSSWA*ACTRGFSPFTESAEACCSSQRYKLAVCFYGIKTMESTCALPTPAPSPLESAVF 202
G+SS + +C R FS +S+ C S FYG K T AL P +++
Sbjct: 42 GSSSPSWSCCRQFSTVVQSSPECLCSVVNSNESSFYGFK-FNRTLALNLPTACNVQTP-- 98
Query: 201 NFSNCSTGKSV 169
+ S C+TG +V
Sbjct: 99 SPSLCNTGGNV 109
>At2g35670.1 68415.m04375 transcription factor, putative /
fertilization-independent seed 2 protein (FIS2)
identical to GB:AF096095
Length = 632
Score = 30.3 bits (65), Expect = 0.89
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = +2
Query: 311 QHASADSVNGEKPRVHAQAQLDVPSEGVHRVLENDGSHVSVHDVTSPPTAAAYEVTPKVF 490
Q D N K +LD+ + + R END +HV+ +V+SPP A + E +
Sbjct: 87 QRRQRDDSNNVKKLNVLLMELDL--DDLPRGTENDSTHVNDDNVSSPPRAHSSEKISDIL 144
Query: 491 HGAARLSSQARRPSAP 538
+++ P P
Sbjct: 145 TTTQLAIAESSEPKVP 160
>At3g24690.1 68416.m03100 expressed protein similar to hypothetical
protein GB:AAB61487 from [Arabidopsis thaliana]
Length = 158
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 404 LENDGSHVSVH-DVTSPPTAAAYEVTPKVFHGAARLSSQARRPSAPQ 541
+ +DG + V D TSP + ++ VTP AR A++P PQ
Sbjct: 112 ISDDGINSEVSKDDTSPSSESSQGVTPSPLSRKARRKRNAKKPQIPQ 158
>At5g07940.1 68418.m00920 expressed protein
Length = 1526
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = -2
Query: 353 PVVSHRSPSQLKRVALVRDTSSPFAFMASRLWNQRVRFRP----QHHLHSNPPFSIFPTA 186
P+V+ SP Q ++ D+ S + + WNQ + +P H L SN + F
Sbjct: 994 PLVASSSPQQSSSSGMMSDSPSGISAPQHQFWNQPSKPQPVILRPHPLPSNNMAASFSRQ 1053
Query: 185 PPANQFYS 162
NQ S
Sbjct: 1054 EKTNQLSS 1061
>At4g29310.1 68417.m04190 expressed protein
Length = 424
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 407 ENDGSHVSVHDVTSPPTAAAYEVTPKVFH-GAARLS 511
E G +++HD++ P AAA +TP V G+ R+S
Sbjct: 231 ERKGWMITIHDLSGSPVAAASMITPFVASPGSDRVS 266
>At3g54590.1 68416.m06040 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 743
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 236 PQHHLHSNPPFSIFPTAPPANQFYSPRRRSFLNVGPPAHI 117
P+ H S PP ++ + PP +YSP + + PP ++
Sbjct: 564 PKVHYKSPPPPYVYNSPPPP--YYSPSPKVYYKSPPPPYV 601
>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 429
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 236 PQHHLHSNPPFSIFPTAPPANQFYSPRRRSFLNVGPPAHI 117
P+ S PP ++ + PP +YSP + N PP +I
Sbjct: 117 PKVEYKSPPPPYVYSSLPPLT-YYSPSPKVIYNSPPPPYI 155
>At3g18360.1 68416.m02335 VQ motif-containing protein contains
PF05678: VQ motif
Length = 285
Score = 27.5 bits (58), Expect = 6.3
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = -2
Query: 212 PPFSIFPTAPPANQFYSPRRRSFLNVGPPAHIRPDASS*VSARKSVDESIALYCRDF 42
P F IFP A PA+ F + F N P P+ S S+ S RDF
Sbjct: 230 PTFPIFPPANPADNFLC-GNQPFANFDDPLFFAPNMRSSFSSSSSSGFDGLTEFRDF 285
>At2g24980.1 68415.m02987 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 559
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -2
Query: 236 PQHHLHSNPPFSIFPTAPPANQFYSPRRRSFLNVGPPAHI 117
P+ + S PP ++ + PP +YSP + + PP+++
Sbjct: 466 PKVYYKSPPPSYVYSSPPPP--YYSPSPKVYYKSPPPSYV 503
>At5g09280.1 68418.m01075 pectate lyase family protein similar to
major pollen allergen Cup a 1 SP:Q9SCG9 from [Cupressus
arizonica]
Length = 297
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 413 DGSHVSVHDVTSPPTAAAYEVTPKVFHGAARLSSQARRPSAPQG 544
DG SVH ++ P Y T + HG +A PS+ G
Sbjct: 65 DGRGASVH-ISGPACLIVYRATDVIIHGLKIHDCKAHPPSSVMG 107
>At3g57860.1 68416.m06450 expressed protein
Length = 243
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 404 GRGEHLPKARPAGLERVPVVSHR 336
GRG H P P G E +P+V+ R
Sbjct: 68 GRGGHTPFRLPQGRENMPIVTAR 90
>At3g43610.1 68416.m04640 tubulin family protein
Length = 1120
Score = 27.1 bits (57), Expect = 8.3
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = -1
Query: 351 RGFSPFTESAEACCSSQRYKLAVCFYGIKTMESTCALPTP-APSPLESAVFNFSNCSTGK 175
R FS S + CSS R L G+ +ST P P S L +V + NC+
Sbjct: 508 RWFSEIDASCSSECSSTRDSLEASEVGLLDSQSTLVGPPPNYLSALRFSVASNGNCNQ-N 566
Query: 174 SVLFSEASFVSECWATGAHKA 112
V S++ ++ KA
Sbjct: 567 LVQHSDSGYIDNNLVRQGEKA 587
>At3g10720.2 68416.m01291 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 619
Score = 27.1 bits (57), Expect = 8.3
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = -2
Query: 221 HSNPPFSIFPTAPPANQFYSPRRRSFLNVGPPAHIRPDASS*VSARKSVDESIALYCRDF 42
HS PP S P PP + P + PP + P + +S S+A +
Sbjct: 36 HSEPP-SQLPFEPPVESPFFPPSQ------PPIFVPPSQPPSLPPSQSQSPSLACKSTPY 88
Query: 41 PRR*RSSENAVSS 3
P+ R+ NAV S
Sbjct: 89 PKLCRTILNAVKS 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,335,907
Number of Sequences: 28952
Number of extensions: 265533
Number of successful extensions: 925
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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