Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0826
(572 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 206 1e-54
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 106 2e-24
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 103 2e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 76 3e-15
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 57 2e-09
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 55 9e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 49 4e-07
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.84
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.0
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.4
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 4.5
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 25 6.0
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.9
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 206 bits (504), Expect = 1e-54
Identities = 103/142 (72%), Positives = 113/142 (79%)
Frame = +1
Query: 82 DEQVAALVVDNGSGMCKAGFA*DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAK 261
+E++AALV+DNGSGMCKAGFA DDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQ+K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 262 EVS*PSNTPSEHRIF*LG*HGENMGFYLL**ELRVAPEEHPVLLTEAPLNPKANREKMTQ 441
P EH I E + + ELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 442 IMFETFNTPAMYVAIQAVLSLY 507
I+FETFN PA YVAIQAVLSLY
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLY 143
Score = 47.2 bits (107), Expect = 2e-06
Identities = 41/107 (38%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Frame = +3
Query: 255 SKRGILTLKYPI*TPNFLTGMTWGKYGVLPFIMRAACRPRGTPSPAH*GSPKPQGQQRED 434
SKRGILTLKYPI K F P P P+ RE
Sbjct: 60 SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSN-REK 118
Query: 435 DPDHVRNIQHARHVRRHPSRALAV-RSGRTTGIVLDSGDGVSHTVPI 572
+ +A L++ SGRTTGIVLDSGDGV+HTVPI
Sbjct: 119 MTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 165
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 106 bits (255), Expect = 2e-24
Identities = 59/137 (43%), Positives = 79/137 (57%), Gaps = 1/137 (0%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFA*DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAKEVS*PS 279
+ +DNGSG KAGFA DD P+ +FP+ VGR +H+ VM QKD +VG EAQ
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 280 NTPSEHRIF*LG*HGENMGFYLL-**ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 456
P E I E + Y+ +L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 457 FNTPAMYVAIQAVLSLY 507
N PA+ ++Q VL+LY
Sbjct: 132 LNVPALSFSLQPVLALY 148
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +3
Query: 510 SGRTTGIVLDSGDGVSHTVPI 572
S RTTGIVL+ GDG++H+VPI
Sbjct: 150 SARTTGIVLECGDGLTHSVPI 170
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 103 bits (247), Expect = 2e-23
Identities = 62/140 (44%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Frame = +1
Query: 94 AALVVDNGSGMCKAGFA*DDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQAKEV 267
A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA+A
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 268 S*PSNTPSEHRIF*LG*HGENMGFYLL**ELRVAPEEHPVLLTEAPLNPKANREKMTQIM 447
P E+ I + Y +L++ P +LLTE P+NP ANREKM + M
Sbjct: 64 LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETM 123
Query: 448 FETFNTPAMYVAIQAVLSLY 507
FE + +YVAIQAVLSLY
Sbjct: 124 FERYGFGGVYVAIQAVLSLY 143
Score = 33.9 bits (74), Expect = 0.017
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 513 GRTTGIVLDSGDGVSHTVPI 572
G ++G+V+DSGDGV+H VP+
Sbjct: 146 GLSSGVVVDSGDGVTHIVPV 165
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 76.2 bits (179), Expect = 3e-15
Identities = 57/159 (35%), Positives = 79/159 (49%), Gaps = 24/159 (15%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFA*DDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 228
+++DNG+G K G+A +DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 229 ------DSYVGDEAQAKEVS*PS-NTPSEHRIF*LG*HGENMGFYLL**ELRVAPEEHPV 387
D ++G++A K + S + P H H E L LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 388 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSL 504
LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLAL 165
Score = 31.5 bits (68), Expect = 0.091
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 522 TGIVLDSGDGVSHTVPI 572
TG V+DSGDGV+H +P+
Sbjct: 180 TGTVVDSGDGVTHIIPV 196
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 56.8 bits (131), Expect = 2e-09
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 1/145 (0%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFA*DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAKEVS*P- 276
LV+DNGS +AG+ + P+ VF ++V R R + + + + VG++ + S
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 277 SNTPSEHRIF*LG*HGENMGFYLL**ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 456
+ +P E + E + Y +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 457 FNTPAMYVAIQAVLSLYGPVVPPVS 531
+N P++ I + S Y P S
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSS 166
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 54.8 bits (126), Expect = 9e-09
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 1/142 (0%)
Frame = +1
Query: 85 EQVAALVVDNGSGMCKAGFA*DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAKE 264
++V+A+V+D GS + GF+ +D P+ V PS G + G + Y+ E
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYIYKSNPGME 64
Query: 265 VS*P-SNTPSEHRIF*LG*HGENMGFYLL**ELRVAPEEHPVLLTEAPLNPKANREKMTQ 441
+ N E+ + ++ Y L +L+ P EHP+L+TE NP NR K +
Sbjct: 65 IKNAIRNGWVENWDVTV-----DLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLE 119
Query: 442 IMFETFNTPAMYVAIQAVLSLY 507
MFE+ PA Y+A Q + +
Sbjct: 120 TMFESLRCPATYLAKQETCAAF 141
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 49.2 bits (112), Expect = 4e-07
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Frame = +1
Query: 85 EQVAALVVDNGSGMCKAGFA*DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAKE 264
E++ +LV+D GS + G+A +++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQI-H 60
Query: 265 VS*PSNTPSEHRIF*LG*HGENMGFYL---L**ELRVAPEEHPVLLTEAPLNPKANREKM 435
P + + E+ + L +L+V P E+ +++TE NP++ R+++
Sbjct: 61 APIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQI 120
Query: 436 TQIMFETFNTPAMYVAIQAV 495
+ FE + PA Y+ QAV
Sbjct: 121 MEAAFEQLHVPAFYLTKQAV 140
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.84
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 253 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 164
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 2.0
Identities = 23/58 (39%), Positives = 27/58 (46%)
Frame = -3
Query: 276 GSGYLFCLCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 103
G G F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 388 LLTEAPLNPKANREKMTQIMFETFN 462
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 295 VQMGYLRVRIPLLLVPHLLHKSPSVPYRP 209
+Q+ Y PL VP +L PSV Y P
Sbjct: 350 LQLSYAHYATPLPAVPTVLSGLPSVAYTP 378
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 452 KHSTRPPCTSPSKPCSRCTVRSYHRYRAGLR 544
KH+ R SKP TVR+ H++ + R
Sbjct: 942 KHTIRYAVYPHSKPLDSSTVRAAHKFNSNFR 972
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +3
Query: 405 PKPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRSGRTTGIVLDSG 545
P GQ+ ++ Q ++H RR +A A S TT + G
Sbjct: 488 PSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAPSSPGTTSAAVPGG 534
>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2
Query: 439 GSSSLCWPWGLG 404
GSS L W WGLG
Sbjct: 140 GSSILSWSWGLG 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,575
Number of Sequences: 5004
Number of extensions: 60999
Number of successful extensions: 158
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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