BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0826 (572 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 206 1e-54 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 106 2e-24 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 103 2e-23 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 76 3e-15 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 57 2e-09 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 55 9e-09 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 49 4e-07 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.84 SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.0 SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.4 SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 4.5 SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 25 6.0 SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.9 SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.9 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 206 bits (504), Expect = 1e-54 Identities = 103/142 (72%), Positives = 113/142 (79%) Frame = +1 Query: 82 DEQVAALVVDNGSGMCKAGFA*DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAK 261 +E++AALV+DNGSGMCKAGFA DDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQ+K Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61 Query: 262 EVS*PSNTPSEHRIF*LG*HGENMGFYLL**ELRVAPEEHPVLLTEAPLNPKANREKMTQ 441 P EH I E + + ELRVAPEEHP LLTEAPLNPK+NREKMTQ Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121 Query: 442 IMFETFNTPAMYVAIQAVLSLY 507 I+FETFN PA YVAIQAVLSLY Sbjct: 122 IIFETFNAPAFYVAIQAVLSLY 143 Score = 47.2 bits (107), Expect = 2e-06 Identities = 41/107 (38%), Positives = 47/107 (43%), Gaps = 1/107 (0%) Frame = +3 Query: 255 SKRGILTLKYPI*TPNFLTGMTWGKYGVLPFIMRAACRPRGTPSPAH*GSPKPQGQQRED 434 SKRGILTLKYPI K F P P P+ RE Sbjct: 60 SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSN-REK 118 Query: 435 DPDHVRNIQHARHVRRHPSRALAV-RSGRTTGIVLDSGDGVSHTVPI 572 + +A L++ SGRTTGIVLDSGDGV+HTVPI Sbjct: 119 MTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 165 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 106 bits (255), Expect = 2e-24 Identities = 59/137 (43%), Positives = 79/137 (57%), Gaps = 1/137 (0%) Frame = +1 Query: 100 LVVDNGSGMCKAGFA*DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAKEVS*PS 279 + +DNGSG KAGFA DD P+ +FP+ VGR +H+ VM QKD +VG EAQ Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71 Query: 280 NTPSEHRIF*LG*HGENMGFYLL-**ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 456 P E I E + Y+ +L PEEHP+LLTE PL N+EK+ + +ET Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131 Query: 457 FNTPAMYVAIQAVLSLY 507 N PA+ ++Q VL+LY Sbjct: 132 LNVPALSFSLQPVLALY 148 Score = 37.1 bits (82), Expect = 0.002 Identities = 15/21 (71%), Positives = 19/21 (90%) Frame = +3 Query: 510 SGRTTGIVLDSGDGVSHTVPI 572 S RTTGIVL+ GDG++H+VPI Sbjct: 150 SARTTGIVLECGDGLTHSVPI 170 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 103 bits (247), Expect = 2e-23 Identities = 62/140 (44%), Positives = 80/140 (57%), Gaps = 2/140 (1%) Frame = +1 Query: 94 AALVVDNGSGMCKAGFA*DDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQAKEV 267 A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA+A Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63 Query: 268 S*PSNTPSEHRIF*LG*HGENMGFYLL**ELRVAPEEHPVLLTEAPLNPKANREKMTQIM 447 P E+ I + Y +L++ P +LLTE P+NP ANREKM + M Sbjct: 64 LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETM 123 Query: 448 FETFNTPAMYVAIQAVLSLY 507 FE + +YVAIQAVLSLY Sbjct: 124 FERYGFGGVYVAIQAVLSLY 143 Score = 33.9 bits (74), Expect = 0.017 Identities = 12/20 (60%), Positives = 18/20 (90%) Frame = +3 Query: 513 GRTTGIVLDSGDGVSHTVPI 572 G ++G+V+DSGDGV+H VP+ Sbjct: 146 GLSSGVVVDSGDGVTHIVPV 165 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 76.2 bits (179), Expect = 3e-15 Identities = 57/159 (35%), Positives = 79/159 (49%), Gaps = 24/159 (15%) Frame = +1 Query: 100 LVVDNGSGMCKAGFA*DDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 228 +++DNG+G K G+A +DAP VFP+++ R G G M K Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66 Query: 229 ------DSYVGDEAQAKEVS*PS-NTPSEHRIF*LG*HGENMGFYLL**ELRVAPEEHPV 387 D ++G++A K + S + P H H E L LR PE+H Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126 Query: 388 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSL 504 LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLAL 165 Score = 31.5 bits (68), Expect = 0.091 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = +3 Query: 522 TGIVLDSGDGVSHTVPI 572 TG V+DSGDGV+H +P+ Sbjct: 180 TGTVVDSGDGVTHIIPV 196 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 56.8 bits (131), Expect = 2e-09 Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 1/145 (0%) Frame = +1 Query: 100 LVVDNGSGMCKAGFA*DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAKEVS*P- 276 LV+DNGS +AG+ + P+ VF ++V R R + + + + VG++ + S Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82 Query: 277 SNTPSEHRIF*LG*HGENMGFYLL**ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 456 + +P E + E + Y +L + EHP+ +TE NP R MT+++FE Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141 Query: 457 FNTPAMYVAIQAVLSLYGPVVPPVS 531 +N P++ I + S Y P S Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSS 166 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 54.8 bits (126), Expect = 9e-09 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 1/142 (0%) Frame = +1 Query: 85 EQVAALVVDNGSGMCKAGFA*DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAKE 264 ++V+A+V+D GS + GF+ +D P+ V PS G + G + Y+ E Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYIYKSNPGME 64 Query: 265 VS*P-SNTPSEHRIF*LG*HGENMGFYLL**ELRVAPEEHPVLLTEAPLNPKANREKMTQ 441 + N E+ + ++ Y L +L+ P EHP+L+TE NP NR K + Sbjct: 65 IKNAIRNGWVENWDVTV-----DLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLE 119 Query: 442 IMFETFNTPAMYVAIQAVLSLY 507 MFE+ PA Y+A Q + + Sbjct: 120 TMFESLRCPATYLAKQETCAAF 141 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 49.2 bits (112), Expect = 4e-07 Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 3/140 (2%) Frame = +1 Query: 85 EQVAALVVDNGSGMCKAGFA*DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAKE 264 E++ +LV+D GS + G+A +++P + PS + GV + ++ YV DE Q Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQI-H 60 Query: 265 VS*PSNTPSEHRIF*LG*HGENMGFYL---L**ELRVAPEEHPVLLTEAPLNPKANREKM 435 P + + E+ + L +L+V P E+ +++TE NP++ R+++ Sbjct: 61 APIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQI 120 Query: 436 TQIMFETFNTPAMYVAIQAV 495 + FE + PA Y+ QAV Sbjct: 121 MEAAFEQLHVPAFYLTKQAV 140 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 28.3 bits (60), Expect = 0.84 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -2 Query: 253 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 164 + L+ K+PS PY SRP A S TR Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335 >SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual Length = 127 Score = 27.1 bits (57), Expect = 2.0 Identities = 23/58 (39%), Positives = 27/58 (46%) Frame = -3 Query: 276 GSGYLFCLCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 103 G G F CLI++IR +SH D EHG II C T L G I+YY Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96 >SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces pombe|chr 2|||Manual Length = 226 Score = 26.2 bits (55), Expect = 3.4 Identities = 10/25 (40%), Positives = 18/25 (72%) Frame = +1 Query: 388 LLTEAPLNPKANREKMTQIMFETFN 462 +L APL+ + +KM +++FET+N Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205 >SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Schizosaccharomyces pombe|chr 1|||Manual Length = 434 Score = 25.8 bits (54), Expect = 4.5 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -2 Query: 295 VQMGYLRVRIPLLLVPHLLHKSPSVPYRP 209 +Q+ Y PL VP +L PSV Y P Sbjct: 350 LQLSYAHYATPLPAVPTVLSGLPSVAYTP 378 >SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1077 Score = 25.4 bits (53), Expect = 6.0 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = +2 Query: 452 KHSTRPPCTSPSKPCSRCTVRSYHRYRAGLR 544 KH+ R SKP TVR+ H++ + R Sbjct: 942 KHTIRYAVYPHSKPLDSSTVRAAHKFNSNFR 972 >SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 647 Score = 25.0 bits (52), Expect = 7.9 Identities = 13/47 (27%), Positives = 20/47 (42%) Frame = +3 Query: 405 PKPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRSGRTTGIVLDSG 545 P GQ+ ++ Q ++H RR +A A S TT + G Sbjct: 488 PSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAPSSPGTTSAAVPGG 534 >SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 225 Score = 25.0 bits (52), Expect = 7.9 Identities = 9/12 (75%), Positives = 9/12 (75%) Frame = -2 Query: 439 GSSSLCWPWGLG 404 GSS L W WGLG Sbjct: 140 GSSILSWSWGLG 151 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,674,575 Number of Sequences: 5004 Number of extensions: 60999 Number of successful extensions: 158 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 135 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 149 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 244081442 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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