SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0826
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   206   1e-54
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...   106   2e-24
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...   103   2e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    76   3e-15
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    57   2e-09
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    55   9e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    49   4e-07
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    28   0.84 
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   2.0  
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p...    26   3.4  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    26   4.5  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   6.0  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.9  
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.9  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  206 bits (504), Expect = 1e-54
 Identities = 103/142 (72%), Positives = 113/142 (79%)
 Frame = +1

Query: 82  DEQVAALVVDNGSGMCKAGFA*DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAK 261
           +E++AALV+DNGSGMCKAGFA DDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQ+K
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61

Query: 262 EVS*PSNTPSEHRIF*LG*HGENMGFYLL**ELRVAPEEHPVLLTEAPLNPKANREKMTQ 441
                   P EH I       E +  +    ELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62  RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121

Query: 442 IMFETFNTPAMYVAIQAVLSLY 507
           I+FETFN PA YVAIQAVLSLY
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLY 143



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 41/107 (38%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
 Frame = +3

Query: 255 SKRGILTLKYPI*TPNFLTGMTWGKYGVLPFIMRAACRPRGTPSPAH*GSPKPQGQQRED 434
           SKRGILTLKYPI            K     F       P   P         P+   RE 
Sbjct: 60  SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSN-REK 118

Query: 435 DPDHVRNIQHARHVRRHPSRALAV-RSGRTTGIVLDSGDGVSHTVPI 572
               +    +A          L++  SGRTTGIVLDSGDGV+HTVPI
Sbjct: 119 MTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 165


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score =  106 bits (255), Expect = 2e-24
 Identities = 59/137 (43%), Positives = 79/137 (57%), Gaps = 1/137 (0%)
 Frame = +1

Query: 100 LVVDNGSGMCKAGFA*DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAKEVS*PS 279
           + +DNGSG  KAGFA DD P+ +FP+ VGR +H+ VM    QKD +VG EAQ        
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71

Query: 280 NTPSEHRIF*LG*HGENMGFYLL-**ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 456
             P E  I       E +  Y+    +L   PEEHP+LLTE PL    N+EK+ +  +ET
Sbjct: 72  QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131

Query: 457 FNTPAMYVAIQAVLSLY 507
            N PA+  ++Q VL+LY
Sbjct: 132 LNVPALSFSLQPVLALY 148



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +3

Query: 510 SGRTTGIVLDSGDGVSHTVPI 572
           S RTTGIVL+ GDG++H+VPI
Sbjct: 150 SARTTGIVLECGDGLTHSVPI 170


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score =  103 bits (247), Expect = 2e-23
 Identities = 62/140 (44%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
 Frame = +1

Query: 94  AALVVDNGSGMCKAGFA*DDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQAKEV 267
           A +V+DNG+G  K G+A D+ PR  FPSIVGRP  R +     +  KD  VGDEA+A   
Sbjct: 4   APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63

Query: 268 S*PSNTPSEHRIF*LG*HGENMGFYLL**ELRVAPEEHPVLLTEAPLNPKANREKMTQIM 447
                 P E+ I         +  Y    +L++ P    +LLTE P+NP ANREKM + M
Sbjct: 64  LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETM 123

Query: 448 FETFNTPAMYVAIQAVLSLY 507
           FE +    +YVAIQAVLSLY
Sbjct: 124 FERYGFGGVYVAIQAVLSLY 143



 Score = 33.9 bits (74), Expect = 0.017
 Identities = 12/20 (60%), Positives = 18/20 (90%)
 Frame = +3

Query: 513 GRTTGIVLDSGDGVSHTVPI 572
           G ++G+V+DSGDGV+H VP+
Sbjct: 146 GLSSGVVVDSGDGVTHIVPV 165


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 76.2 bits (179), Expect = 3e-15
 Identities = 57/159 (35%), Positives = 79/159 (49%), Gaps = 24/159 (15%)
 Frame = +1

Query: 100 LVVDNGSGMCKAGFA*DDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 228
           +++DNG+G  K G+A +DAP  VFP+++   R  G   G         M  K        
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66

Query: 229 ------DSYVGDEAQAKEVS*PS-NTPSEHRIF*LG*HGENMGFYLL**ELRVAPEEHPV 387
                 D ++G++A  K  +  S + P  H       H E      L   LR  PE+H  
Sbjct: 67  RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126

Query: 388 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSL 504
           LLTE PLNP  NRE   +IMFE+FN   +Y+A+QAVL+L
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLAL 165



 Score = 31.5 bits (68), Expect = 0.091
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 522 TGIVLDSGDGVSHTVPI 572
           TG V+DSGDGV+H +P+
Sbjct: 180 TGTVVDSGDGVTHIIPV 196


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 1/145 (0%)
 Frame = +1

Query: 100 LVVDNGSGMCKAGFA*DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAKEVS*P- 276
           LV+DNGS   +AG+  +  P+ VF ++V R R +     + +  + VG++   +  S   
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82

Query: 277 SNTPSEHRIF*LG*HGENMGFYLL**ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 456
           + +P E  +       E +  Y    +L +   EHP+ +TE   NP   R  MT+++FE 
Sbjct: 83  ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141

Query: 457 FNTPAMYVAIQAVLSLYGPVVPPVS 531
           +N P++   I  + S Y    P  S
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSS 166


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 54.8 bits (126), Expect = 9e-09
 Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 1/142 (0%)
 Frame = +1

Query: 85  EQVAALVVDNGSGMCKAGFA*DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAKE 264
           ++V+A+V+D GS   + GF+ +D P+ V PS  G       + G    + Y+       E
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYIYKSNPGME 64

Query: 265 VS*P-SNTPSEHRIF*LG*HGENMGFYLL**ELRVAPEEHPVLLTEAPLNPKANREKMTQ 441
           +     N   E+    +     ++  Y L  +L+  P EHP+L+TE   NP  NR K  +
Sbjct: 65  IKNAIRNGWVENWDVTV-----DLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLE 119

Query: 442 IMFETFNTPAMYVAIQAVLSLY 507
            MFE+   PA Y+A Q   + +
Sbjct: 120 TMFESLRCPATYLAKQETCAAF 141


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
 Frame = +1

Query: 85  EQVAALVVDNGSGMCKAGFA*DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAKE 264
           E++ +LV+D GS   + G+A +++P  + PS      + GV   +  ++ YV DE Q   
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQI-H 60

Query: 265 VS*PSNTPSEHRIF*LG*HGENMGFYL---L**ELRVAPEEHPVLLTEAPLNPKANREKM 435
              P       +   +    E+  +     L  +L+V P E+ +++TE   NP++ R+++
Sbjct: 61  APIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQI 120

Query: 436 TQIMFETFNTPAMYVAIQAV 495
            +  FE  + PA Y+  QAV
Sbjct: 121 MEAAFEQLHVPAFYLTKQAV 140


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 253 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 164
           +  L+ K+PS PY  SRP   A   S  TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335


>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 127

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 23/58 (39%), Positives = 27/58 (46%)
 Frame = -3

Query: 276 GSGYLFCLCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 103
           G G  F  CLI++IR  +SH            D  EHG   II C T L   G I+YY
Sbjct: 49  GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96


>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 388 LLTEAPLNPKANREKMTQIMFETFN 462
           +L  APL+ +   +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 295 VQMGYLRVRIPLLLVPHLLHKSPSVPYRP 209
           +Q+ Y     PL  VP +L   PSV Y P
Sbjct: 350 LQLSYAHYATPLPAVPTVLSGLPSVAYTP 378


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 452  KHSTRPPCTSPSKPCSRCTVRSYHRYRAGLR 544
            KH+ R      SKP    TVR+ H++ +  R
Sbjct: 942  KHTIRYAVYPHSKPLDSSTVRAAHKFNSNFR 972


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +3

Query: 405 PKPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRSGRTTGIVLDSG 545
           P   GQ+        ++ Q ++H RR   +A A  S  TT   +  G
Sbjct: 488 PSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAPSSPGTTSAAVPGG 534


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 439 GSSSLCWPWGLG 404
           GSS L W WGLG
Sbjct: 140 GSSILSWSWGLG 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,575
Number of Sequences: 5004
Number of extensions: 60999
Number of successful extensions: 158
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -