Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0826
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   6.6  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   8.7  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   8.7  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   8.7  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   8.7  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   8.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   8.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 358  LRVAPEEHPVLLTEAPLNPKANREKM 435
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 215 VWDRRTLM*EMRHKQKRYPDPQIPHLNTE 301
           VW+R T +  +  KQK +P+  +   N E
Sbjct: 523 VWERDTRVLPINRKQKVFPNGTLIIENVE 551


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 466 PAMYVAIQAVLSLYGPVVPPVSCWT 540
           P+  +A++    L+G ++PP  C+T
Sbjct: 349 PSAILAMRLSHPLHGNLLPPGVCYT 373


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 519 YDRTVQREHGLDGDVHGG 466
           Y + V  ++G+ GD +GG
Sbjct: 60  YKQRVYDKNGMTGDAYGG 77


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 149 SHAKPALHIPEPLSTT 102
           SHAKP+L   EP   T
Sbjct: 268 SHAKPSLIDDEPTEVT 283


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 149 SHAKPALHIPEPLSTT 102
           SHAKP+L   EP   T
Sbjct: 268 SHAKPSLIDDEPTEVT 283


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 264 LFCLCLISYIRV 229
           LF LC++SY+ V
Sbjct: 8   LFTLCIVSYMMV 19


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 149 SHAKPALHIPEPLSTT 102
           SHAKP+L   EP   T
Sbjct: 268 SHAKPSLIDDEPTEVT 283


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 180 DRGEHGARSIISCETGLA 127
           D GEH   ++   E GLA
Sbjct: 130 DPGEHNGDTVTDVEAGLA 147


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 180 DRGEHGARSIISCETGLA 127
           D GEH   ++   E GLA
Sbjct: 125 DPGEHNGDTVTDVEAGLA 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,455
Number of Sequences: 438
Number of extensions: 4985
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)