Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0825
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 95 5e-21
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 95 8e-21
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 28 0.79
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 0.79
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 28 1.0
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 27 1.4
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 4.2
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 5.6
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 5.6
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces... 25 5.6
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 25 7.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 9.7
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 9.7
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 9.7
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 25 9.7
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 25 9.7
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 95.5 bits (227), Expect = 5e-21
Identities = 47/93 (50%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Frame = -1
Query: 530 RTSVR-LFQDGLVIKKPVAVHSRACVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXX 354
R +VR L +DGLVI+KP +HSR +RK A+R GRH G+GKR+GTA ARMP +W
Sbjct: 38 RQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMR 97
Query: 353 XXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGN 255
R + KID+HLYH+LY++AKGN
Sbjct: 98 RQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGN 130
Score = 38.7 bits (86), Expect = 6e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = -3
Query: 270 EGEG*LFKNKRVLMEYIHRKKAEKARTKMLSDQ 172
E +G FK+KR L+E+I R KAE RTK++ +Q
Sbjct: 126 EAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 94.7 bits (225), Expect = 8e-21
Identities = 44/88 (50%), Positives = 58/88 (65%)
Frame = -1
Query: 518 RLFQDGLVIKKPVAVHSRACVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXX 339
+L +DGLVI+KP +HSR +RK A+R GRH G+GKR+GTA ARMP +W
Sbjct: 43 KLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVL 102
Query: 338 XXXXXXXRTAKKIDRHLYHSLYMKAKGN 255
R + KID+HLYH+LY++AKGN
Sbjct: 103 RRLLRKYRESGKIDKHLYHTLYLEAKGN 130
Score = 38.7 bits (86), Expect = 6e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = -3
Query: 270 EGEG*LFKNKRVLMEYIHRKKAEKARTKMLSDQ 172
E +G FK+KR L+E+I R KAE RTK++ +Q
Sbjct: 126 EAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -3
Query: 546 NTNSRQNIRKIV 511
N NSRQNIRK+V
Sbjct: 34 NANSRQNIRKLV 45
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 28.3 bits (60), Expect = 0.79
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = +1
Query: 199 LLSLLPVDVLHEHTLVLEQLPFAFM*SEWYRCLSIFLAVLYFRSNFLKTL-----CLCTH 363
L+++ V H +LVL +L ++ CLS+++++ Y R K L C C
Sbjct: 121 LVTIFTCFVRHYWSLVLTRLLLGICEGGFFPCLSLYISMTYKREEQGKRLAYLYVCSCFS 180
Query: 364 SSFCGIRA 387
+F G+ A
Sbjct: 181 GAFGGLIA 188
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 28.3 bits (60), Expect = 0.79
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +3
Query: 375 WHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDKTILKQSYGCSVW 536
WH G +T+ + + D G+ CY+ D ++L+ YG S W
Sbjct: 496 WHLSSGFHLHITRFEAHDMGKVKDIDTDFEPGLQCYQVGSDTSVLR--YGLSFW 547
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 466 ALVSAKTQKHVERVVTVALVREEVQPMRVCHRR 368
++V K K E+++ AL RE V+P R H++
Sbjct: 652 SVVEVKDAKAAEKILRYALFREVVKPKRKKHKK 684
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 27.5 bits (58), Expect = 1.4
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +2
Query: 182 SIFVLAFSAFFLWMYSMSTRLFLNNYPSPSCRVSGIDACQSSWQFCTSGAIFLKPFVFVP 361
S+FVLA ++ S ST L L+ P P + + W+ CT + KP V +
Sbjct: 245 SVFVLADGTACIFTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCT--ILKSKP-VSLC 301
Query: 362 IVPSVAYAHWL 394
+ P +WL
Sbjct: 302 VYPEKITFNWL 312
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 533 DRTSVRLFQDGLVIKKPVAVHSRACVRKNTEARRKGR 423
D +V LFQD + +A S + +R N RR+GR
Sbjct: 69 DIAAVTLFQDNNISTTTLAPPSPSPLRLNEAPRRRGR 105
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 221 MYSMSTRLFLNNYPSPSCRVSGIDACQSSWQFCTSGAIFLKPFVFVP 361
+Y+ + + LNN P SCR + + F T A+ + ++ VP
Sbjct: 359 LYTKNYHIRLNNKPPASCRWTACGLAGAIASFITLAAVVFE-YIHVP 404
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.4 bits (53), Expect = 5.6
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Frame = +1
Query: 109 GGNTFLAALACLLHFIA------AGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEQLPFAF 270
GG F + L C L ++ + ++AKH R L DV+ +L+++ LPF F
Sbjct: 573 GGVLFFSILFCALQSLSEIANMFSQRPIIAKH-RASALYHPAADVIS--SLIVD-LPFRF 628
Query: 271 M*SEWYRCLSIFLAVLYFRSNFLKT 345
+ +S+F VLYF +N +T
Sbjct: 629 I------NISVFSIVLYFLTNLKRT 647
>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 67 FVFSSEGLQQFLLLGGNTFLAALACLLHFIAA 162
+V E +FLLLG F A + LLH +++
Sbjct: 50 YVLPFEKNNRFLLLGEGNFSFAFSLLLHHVSS 81
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 320 TSGAIFLKPFVFVPIVPSVAYAHWLYLFSYQSHS 421
+SG + LKP + P + W+ F +SHS
Sbjct: 193 SSGGLLLKPAGRIGSSPIPGHGFWIESFDNKSHS 226
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 127 AALACLLHFIAAGLSLVAKHLRPGLLSLLP 216
A L CLL IAA L+ H+ P L LLP
Sbjct: 626 AKLLCLL--IAAAPRLIESHVEPILQILLP 653
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 24.6 bits (51), Expect = 9.7
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +2
Query: 248 LNNYPSPSCRVSGIDACQSSWQFCTSGAIFLKPFVF----VPIVPSVAYAHWLYLFSYQS 415
L+ + S +C+VS +S + + + LK V P++ +Y L FS QS
Sbjct: 581 LDQWHSEACKVSQGTKFRSMIYYGSEKPLDLKSCVIDTSTAPLIIITSYGVLLSEFSQQS 640
Query: 416 HSDDPFYV 439
HS F V
Sbjct: 641 HSSGLFSV 648
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 389 WLYLFSYQSHSDDPFYVLLCFCGHKRGS 472
W Y+S D FY ++ F H RGS
Sbjct: 824 WGETMVYESIISDDFYSMIRFLVHHRGS 851
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 64 GFVFSSEGLQQFLLLGGNTFLAA 132
G VFS + L +F+ GGN F+ A
Sbjct: 83 GPVFSPKSLLEFVQSGGNLFVVA 105
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Frame = +1
Query: 97 FLLLGGNT-----FLAALACLLHFIAAGL 168
F+ GGN FL A C+L+ I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,015,430
Number of Sequences: 5004
Number of extensions: 38442
Number of successful extensions: 131
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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