Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0825
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405...   100   7e-22
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145...   100   7e-22
03_02_0050 + 5272471-5274861                                           31   0.61 
01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416     29   3.2  
04_04_1703 + 35477943-35477989,35478347-35478474,35479107-354794...    28   5.6  

>03_05_0125 -
           21039767-21039791,21039876-21039922,21040220-21040533,
           21040613-21040735,21041599-21041710
          Length = 206

 Score =  100 bits (240), Expect = 7e-22
 Identities = 45/88 (51%), Positives = 58/88 (65%)
 Frame = -1

Query: 518 RLFQDGLVIKKPVAVHSRACVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXX 339
           +L +DG +IKKP  +HSR+  R+  EA++KGRH G+GKRRGT  AR+P K LW       
Sbjct: 43  KLVKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVL 102

Query: 338 XXXXXXXRTAKKIDRHLYHSLYMKAKGN 255
                  R AKKID+H+YH +YMK KGN
Sbjct: 103 RRLLRKYREAKKIDKHMYHDMYMKVKGN 130



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = -3

Query: 264 EG*LFKNKRVLMEYIHRKKAEKARTKMLSDQ 172
           +G +FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 128 KGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>03_02_0934 -
           12513810-12513834,12513918-12513970,12514212-12514525,
           12514608-12514730,12515710-12515821
          Length = 208

 Score =  100 bits (240), Expect = 7e-22
 Identities = 45/88 (51%), Positives = 58/88 (65%)
 Frame = -1

Query: 518 RLFQDGLVIKKPVAVHSRACVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXX 339
           +L +DG +IKKP  +HSR+  R+  EA++KGRH G+GKRRGT  AR+P K LW       
Sbjct: 43  KLVKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVL 102

Query: 338 XXXXXXXRTAKKIDRHLYHSLYMKAKGN 255
                  R AKKID+H+YH +YMK KGN
Sbjct: 103 RRLLRKYREAKKIDKHMYHDMYMKVKGN 130



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = -3

Query: 264 EG*LFKNKRVLMEYIHRKKAEKARTKMLSDQ 172
           +G +FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 128 KGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>03_02_0050 + 5272471-5274861
          Length = 796

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 100 LLLGGNTFLAALACLLHFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEQLP 261
           LLL     L+  +CL   +     L  +HL P LLS +P+D L H H  +L  LP
Sbjct: 79  LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHLP 133


>01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416
          Length = 302

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 503 GLVIKKPVAVHSRACVRKNTEARRKGRHCGFGKRRGTA 390
           G+ +K+    H  +    +    R+GRH G+G+RR +A
Sbjct: 212 GITLKEDEKQHGTSSSAADGGGLRRGRHDGWGRRRSSA 249


>04_04_1703 +
           35477943-35477989,35478347-35478474,35479107-35479400,
           35479718-35480052,35480152-35480220,35480403-35480528
          Length = 332

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 518 RLFQDGLVIKKPVAVHSRACVRKNTE-ARRKGRHCGFGKRRGTANA 384
           R F DG+  ++PV +  R C     E AR+ GR     +RRG  +A
Sbjct: 110 RFFTDGVAQRRPVLLLRRRCPEPEQEPARQDGRQL---RRRGLRSA 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,961,882
Number of Sequences: 37544
Number of extensions: 276718
Number of successful extensions: 786
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)