Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0825
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              115   2e-26
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)          29   2.5  
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)                      28   4.4  
SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   28   5.8  
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                   27   7.6  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  115 bits (277), Expect = 2e-26
 Identities = 58/93 (62%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
 Frame = -1

Query: 530 RTSVR-LFQDGLVIKKPVAVHSRACVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXX 354
           R +VR L +DGL+IKKP  VHSRA VRK  EAR KGRH G GKR+GTANARMPQK +W  
Sbjct: 66  RQNVRKLIKDGLIIKKPEIVHSRARVRKADEARSKGRHSGHGKRKGTANARMPQKTIWIR 125

Query: 353 XXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGN 255
                       R AKKID H+YHSLYMK+KGN
Sbjct: 126 RMRVLRRLLRKYREAKKIDNHMYHSLYMKSKGN 158



 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 31/70 (44%), Positives = 42/70 (60%)
 Frame = -3

Query: 270 EGEG*LFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXELL 91
           + +G +FKNKRVLMEYIH+KKAEKAR+K+LSDQ                        ++L
Sbjct: 154 KSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNKNKAAKQRRDDRMEQKRKDML 213

Query: 90  QTFAREDEAA 61
             +A+E+EAA
Sbjct: 214 SAYAKEEEAA 223


>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 338 LKPFVFVPIVPSVAY--AHWLYLFSYQSHSDDPFYVLLCFCGH 460
           +K + F+P    V +    W +  ++  H+DDPF V    C H
Sbjct: 72  IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114


>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
          Length = 646

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 338 LKPFVFVPIVPSVAY--AHWLYLFSYQSHSDDPFYVLLCFCGH 460
           +K + F+P    V +    W +  ++  H+DDPF V    C H
Sbjct: 72  IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114


>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
          Length = 248

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +1

Query: 97  FLLLGGNTFLAALAC 141
           F L+GG TFLAALAC
Sbjct: 70  FALMGGLTFLAALAC 84


>SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1275

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/58 (22%), Positives = 25/58 (43%)
 Frame = +2

Query: 173 WSLSIFVLAFSAFFLWMYSMSTRLFLNNYPSPSCRVSGIDACQSSWQFCTSGAIFLKP 346
           W  ++  +  S    W+Y +S R +   + +    + G     SSWQ   +  + L+P
Sbjct: 683 WGFNLLAMFSSCINPWLYCLSNRTYRREFMALLLCMPGFQTGGSSWQPTATLQMPLRP 740


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 113 PPRRRNCCRPSLEKTKPRLPL 51
           PP  +N  +P ++KTKP  PL
Sbjct: 199 PPSEKNAFQPPMKKTKPSSPL 219


>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 467 RACVRKNTEARRKGRHCGFGKRRGTANAR 381
           +A  RK    RR+ R  G  K+R TANAR
Sbjct: 17  KANSRKKRRRRRRPRLTGLSKQRQTANAR 45


>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 998

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = -1

Query: 305 KIDRHL---YHSLYMKAKGNCSRTSVCSWS-TST 216
           K DRH+    H+ ++  +G CS   VC W  TST
Sbjct: 567 KKDRHVAEDMHARFILLRGECSGGKVCEWQLTST 600


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,850,519
Number of Sequences: 59808
Number of extensions: 302312
Number of successful extensions: 931
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)