Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0825
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal pro... 114 5e-26
U67947-2|AAB07558.1| 204|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z77652-12|CAI70406.1| 310|Caenorhabditis elegans Hypothetical p... 31 0.41
U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical pr... 30 0.95
Z81063-1|CAB02952.1| 376|Caenorhabditis elegans Hypothetical pr... 29 1.7
AF036692-8|AAB88329.1| 162|Caenorhabditis elegans Hypothetical ... 28 3.9
AF482952-1|AAL89754.1| 668|Caenorhabditis elegans CUP-5L protein. 28 5.1
AF338583-1|AAK19624.1| 611|Caenorhabditis elegans CUP-5 protein. 28 5.1
AC006679-13|AAL38965.1| 644|Caenorhabditis elegans Coelomocyte ... 28 5.1
AC006679-12|AAM15596.1| 611|Caenorhabditis elegans Coelomocyte ... 28 5.1
AC006679-11|AAP82643.1| 668|Caenorhabditis elegans Coelomocyte ... 28 5.1
AC006679-10|AAP82642.1| 619|Caenorhabditis elegans Coelomocyte ... 28 5.1
Z81104-7|CAB70253.2| 647|Caenorhabditis elegans Hypothetical pr... 27 6.7
AC024830-6|AAF59601.3| 603|Caenorhabditis elegans Hypothetical ... 27 6.7
>AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 19 protein.
Length = 198
Score = 114 bits (274), Expect = 5e-26
Identities = 53/88 (60%), Positives = 62/88 (70%)
Frame = -1
Query: 518 RLFQDGLVIKKPVAVHSRACVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXX 339
RL DGL+I+KPV VHSR R+ EARRKGRH G+GKRRGTANARMP+K LW
Sbjct: 43 RLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVL 102
Query: 338 XXXXXXXRTAKKIDRHLYHSLYMKAKGN 255
R AKK+D+HLYH LY++AKGN
Sbjct: 103 RNLLRRYRDAKKLDKHLYHELYLRAKGN 130
Score = 37.5 bits (83), Expect = 0.006
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = -3
Query: 252 FKNKRVLMEYIHRKKAEKARTKMLSDQ 172
FKNK+ L+EYI +KK E R K L+DQ
Sbjct: 132 FKNKKNLIEYIFKKKTENKRAKQLADQ 158
>U67947-2|AAB07558.1| 204|Caenorhabditis elegans Hypothetical
protein H03E18.2 protein.
Length = 204
Score = 33.1 bits (72), Expect = 0.14
Identities = 22/86 (25%), Positives = 37/86 (43%)
Frame = +2
Query: 197 AFSAFFLWMYSMSTRLFLNNYPSPSCRVSGIDACQSSWQFCTSGAIFLKPFVFVPIVPSV 376
A S F L +Y R+ + I S + + T + LKP++ IV ++
Sbjct: 58 AISHFVLMLYDCDLRMIDMAFAIWPIVTVTIALVFSYFSYSTHSSTSLKPYIAHHIVMAI 117
Query: 377 AYAHWLYLFSYQSHSDDPFYVLLCFC 454
+Y L+LF+ + F +L FC
Sbjct: 118 SYCFCLFLFAMFAWKQHFFVEILSFC 143
>Z77652-12|CAI70406.1| 310|Caenorhabditis elegans Hypothetical
protein C06B3.14 protein.
Length = 310
Score = 31.5 bits (68), Expect = 0.41
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = +2
Query: 188 FVLAFSAFFLWMYSMSTRLFLNNYPSPSCRVSGIDACQSSWQFCTSGAIFLKPFVFVPIV 367
F+ A+ FL + +S R++ YP S + W +C A+FL F+P
Sbjct: 92 FIYAYP-MFLTILMISERIYCIIYPFGRAFTS-----KKLWLYCLGLAMFLLILFFIPFF 145
Query: 368 PSVAYAHWLYLFSYQSHSD-DPFYVLLCFCGHKR 466
A + Y F Y S D D + L F + R
Sbjct: 146 GGCADNYSFYDFDYTSECDPDDHPITLMFDEYAR 179
>U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical
protein K09E3.1 protein.
Length = 675
Score = 30.3 bits (65), Expect = 0.95
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 146 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPL 51
RRHAS +PP NC +P+ ++T+ + L
Sbjct: 14 RRHASEGGTPIPPTPANCGKPTKKRTRGHVSL 45
>Z81063-1|CAB02952.1| 376|Caenorhabditis elegans Hypothetical
protein F15D3.2 protein.
Length = 376
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 99 PPSWRQYVPRGACVPP 146
P SW QY P+G C+ P
Sbjct: 221 PNSWHQYQPKGTCIQP 236
>AF036692-8|AAB88329.1| 162|Caenorhabditis elegans Hypothetical
protein C44B12.6 protein.
Length = 162
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 125 RNVLPPRRRNCCRPSLEKTKPRLP 54
R++L P+ R+C PS++K+ LP
Sbjct: 51 RHMLTPKSRDCSEPSIDKSSEVLP 74
>AF482952-1|AAL89754.1| 668|Caenorhabditis elegans CUP-5L protein.
Length = 668
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +1
Query: 100 LLLGGNTFLAALACLLHFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEQLPFAFM*S 279
LL+GG + C+L I +L+ HL S +VL V +QL F +
Sbjct: 329 LLIGGTDIFVLILCILSLILCCRALIKAHLLQIKTSDYFENVLKNKITVTDQLDFLNL-- 386
Query: 280 EWY 288
WY
Sbjct: 387 -WY 388
>AF338583-1|AAK19624.1| 611|Caenorhabditis elegans CUP-5 protein.
Length = 611
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +1
Query: 100 LLLGGNTFLAALACLLHFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEQLPFAFM*S 279
LL+GG + C+L I +L+ HL S +VL V +QL F +
Sbjct: 329 LLIGGTDIFVLILCILSLILCCRALIKAHLLQIKTSDYFENVLKNKITVTDQLDFLNL-- 386
Query: 280 EWY 288
WY
Sbjct: 387 -WY 388
>AC006679-13|AAL38965.1| 644|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform b protein.
Length = 644
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +1
Query: 100 LLLGGNTFLAALACLLHFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEQLPFAFM*S 279
LL+GG + C+L I +L+ HL S +VL V +QL F +
Sbjct: 325 LLIGGTDIFVLILCILSLILCCRALIKAHLLQIKTSDYFENVLKNKITVTDQLDFLNL-- 382
Query: 280 EWY 288
WY
Sbjct: 383 -WY 384
>AC006679-12|AAM15596.1| 611|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform a protein.
Length = 611
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +1
Query: 100 LLLGGNTFLAALACLLHFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEQLPFAFM*S 279
LL+GG + C+L I +L+ HL S +VL V +QL F +
Sbjct: 329 LLIGGTDIFVLILCILSLILCCRALIKAHLLQIKTSDYFENVLKNKITVTDQLDFLNL-- 386
Query: 280 EWY 288
WY
Sbjct: 387 -WY 388
>AC006679-11|AAP82643.1| 668|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform d protein.
Length = 668
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +1
Query: 100 LLLGGNTFLAALACLLHFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEQLPFAFM*S 279
LL+GG + C+L I +L+ HL S +VL V +QL F +
Sbjct: 329 LLIGGTDIFVLILCILSLILCCRALIKAHLLQIKTSDYFENVLKNKITVTDQLDFLNL-- 386
Query: 280 EWY 288
WY
Sbjct: 387 -WY 388
>AC006679-10|AAP82642.1| 619|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform c protein.
Length = 619
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +1
Query: 100 LLLGGNTFLAALACLLHFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEQLPFAFM*S 279
LL+GG + C+L I +L+ HL S +VL V +QL F +
Sbjct: 337 LLIGGTDIFVLILCILSLILCCRALIKAHLLQIKTSDYFENVLKNKITVTDQLDFLNL-- 394
Query: 280 EWY 288
WY
Sbjct: 395 -WY 396
>Z81104-7|CAB70253.2| 647|Caenorhabditis elegans Hypothetical
protein M199.3 protein.
Length = 647
Score = 27.5 bits (58), Expect = 6.7
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 275 RVSG--IDACQSSWQFCTSGAIFLKPFVFVPIVPSVAYAHWLYLFSYQSHSDDPFYVLLC 448
RV G +ACQS+ T + F F+ + +VAY W + SDD V+
Sbjct: 555 RVDGKRTEACQSTPD--TPNCMSQSGFTFINPMSTVAYPKWASSIGARDGSDDDCIVIKT 612
Query: 449 FCGHK 463
G K
Sbjct: 613 VSGKK 617
>AC024830-6|AAF59601.3| 603|Caenorhabditis elegans Hypothetical
protein Y55F3BR.8a protein.
Length = 603
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 295 LSIFLAVLYFRSNFLK 342
L++ LA++YFRSNF K
Sbjct: 8 LAVILAIIYFRSNFSK 23
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,545,392
Number of Sequences: 27780
Number of extensions: 228946
Number of successful extensions: 651
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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