Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0825
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 99 1e-21
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 97 5e-21
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 94 5e-20
At4g05080.1 68417.m00754 F-box family protein contains Pfam PF00... 29 2.0
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 2.7
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 29 2.7
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 28 4.7
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 27 6.2
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 27 8.3
At3g03770.1 68416.m00383 leucine-rich repeat transmembrane prote... 27 8.3
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 99 bits (238), Expect = 1e-21
Identities = 44/88 (50%), Positives = 57/88 (64%)
Frame = -1
Query: 518 RLFQDGLVIKKPVAVHSRACVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXX 339
+L +DG +I+KP +HSR+ R EA+RKGRH G+GKR+GT AR+P K LW
Sbjct: 43 KLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVL 102
Query: 338 XXXXXXXRTAKKIDRHLYHSLYMKAKGN 255
R +KKIDRH+YH +YMK KGN
Sbjct: 103 RRFLSKYRESKKIDRHMYHDMYMKVKGN 130
Score = 47.2 bits (107), Expect = 7e-06
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = -3
Query: 264 EG*LFKNKRVLMEYIHRKKAEKARTKMLSDQ 172
+G +FKNKRVLME IH+ KAEKAR K L+DQ
Sbjct: 128 KGNVFKNKRVLMESIHKMKAEKAREKTLADQ 158
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 97.5 bits (232), Expect = 5e-21
Identities = 43/88 (48%), Positives = 56/88 (63%)
Frame = -1
Query: 518 RLFQDGLVIKKPVAVHSRACVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXX 339
+L +DG +I+KP +HSR+ R+ A+RKGRH G+GKR+GT AR+P K LW
Sbjct: 43 KLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVL 102
Query: 338 XXXXXXXRTAKKIDRHLYHSLYMKAKGN 255
R KKIDRH+YH +YMK KGN
Sbjct: 103 RRLLKKYRETKKIDRHMYHDMYMKVKGN 130
Score = 48.8 bits (111), Expect = 2e-06
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = -3
Query: 264 EG*LFKNKRVLMEYIHRKKAEKARTKMLSDQ 172
+G +FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 128 KGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 94.3 bits (224), Expect = 5e-20
Identities = 41/88 (46%), Positives = 55/88 (62%)
Frame = -1
Query: 518 RLFQDGLVIKKPVAVHSRACVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXX 339
+L +DG +I+KP +HSR+ RK A+ KGRH G+GKR+GT AR+P K LW
Sbjct: 43 KLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVL 102
Query: 338 XXXXXXXRTAKKIDRHLYHSLYMKAKGN 255
R KKID+H+YH +YM+ KGN
Sbjct: 103 RRLLKKYRETKKIDKHMYHDMYMRVKGN 130
Score = 48.8 bits (111), Expect = 2e-06
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = -3
Query: 264 EG*LFKNKRVLMEYIHRKKAEKARTKMLSDQ 172
+G +FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 128 KGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>At4g05080.1 68417.m00754 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 391
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 369 LLWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDKTILKQSYGCSVWSW 542
++W+ +G + T T ST FC+ D + RFLD+K + Y +SW
Sbjct: 118 VIWNPYLGQIRWIQLKTETMYST-FCLRYDNNKNHKILRFLDNKQGSYEIYDLKSYSW 174
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 28.7 bits (61), Expect = 2.7
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +2
Query: 173 WSLSIFVLAFSAFFLWMYSMSTRL 244
W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +1
Query: 319 YFRSNFLKTLCLCTHSSFCGIRALAVPLLLPKPQ*RPFLRASVFLRTQAREC 474
Y N KTLC S G+RA A + L Q R RA++ +++Q R C
Sbjct: 796 YICQNAYKTLCSSACSIQTGMRAKAARIEL---QLRKKRRATIIIQSQIRRC 844
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 506 DGLVIKKPVAVHSRACVRKNTEARRKGRHCGFGKRRGT 393
D L++ H R+ VR+ R +GR G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853
>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1663
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 154 IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTL 243
IA L KHL+P L+SL+P V H EH L
Sbjct: 974 IALVLDRAPKHLQPDLVSLVPKLVEHSEHPL 1004
>At5g15920.1 68418.m01862 structural maintenance of chromosomes
(SMC) family protein (MSS2) similar to SMC-related
protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1053
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 324 EVQNCQED*QASIPLTLHEGEG*LFKNKRVLMEYIHRK-KAEKARTKMLSDQ 172
E+ E+ +A+I L + LF N+ +L EY HR+ + TK+ +D+
Sbjct: 810 EMPTTVEELEAAIQDNLSQANSILFINENILQEYEHRQSQIYTISTKLETDK 861
>At3g03770.1 68416.m00383 leucine-rich repeat transmembrane protein
kinase, putative may contain C-terminal ser/thr protein
kinase domain, similar to serine/threonine protein
kinase Pto GB:AAB47421 [Lycopersicon esculentum]
Length = 802
Score = 27.1 bits (57), Expect = 8.3
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 238 TLVLEQLPFAFM*SEWYRCLSIFLAVLYFRSNFLKTLCLCTHSSFCGIRALAV 396
TL+L++ F+ +W L LAVL R N L + SS G+R LA+
Sbjct: 157 TLILDENMFSGELPDWIDSLPS-LAVLSLRKNVLNGSLPSSLSSLSGLRVLAL 208
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,869,363
Number of Sequences: 28952
Number of extensions: 212331
Number of successful extensions: 603
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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