Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0824
         (594 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.1  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   3.4  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   4.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 517  VSAEETVGENEASKRYTIS 573
            V+A  T+GE + SK+ T+S
Sbjct: 1282 VTAATTIGEGQPSKKVTVS 1300



 Score = 21.8 bits (44), Expect = 4.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 398  GSGEPPEKVSVGDAYTFSVDSPTSPHVE 481
            GS EP E V++  A       PTS  VE
Sbjct: 978  GSSEPSETVTIITAEEVPGGPPTSIRVE 1005


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 15/57 (26%), Positives = 21/57 (36%)
 Frame = +2

Query: 416 EKVSVGDAYTFSVDSPTSPHVEVLGPARRPVLCKYLLKKP*VKMRRANGTPSHLCLL 586
           E +S   A+T  +  P  P V  LG  + P     L +    +     G P   C L
Sbjct: 53  ESLSPSSAHTVLIPQPLHPSVPRLGHPQWPFAWGSLXRSSSPQTSAPTGPPIVRCAL 109


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 185 DNGRWSWEFRGDGEWRTGTDCSGTQGAHTY 274
           D+G W W+   D E  T    + ++   TY
Sbjct: 26  DSGIWYWQCNTDEETCTRISSTVSRNTDTY 55


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 413 EARPILHRSRALAPTRDT 360
           + R +LHR   L P++DT
Sbjct: 629 DRRGLLHRQFNLPPSKDT 646


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 532 FLQQILAQDGSPGGAKHL 479
           F  Q+L Q  SP GA HL
Sbjct: 269 FKPQVLPQWPSPIGASHL 286


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,805
Number of Sequences: 336
Number of extensions: 3329
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)