Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0824
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    28   0.89 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.1  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    27   2.7  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    26   3.6  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   6.3  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   6.3  
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    25   8.3  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   8.3  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   8.3  

>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 371 SAPARVIGAGSGEPPEKVSVG---DAYTFSVDSPTSPHVEVL 487
           S PARV+    G+PP K++V       TF+  +P +PH + L
Sbjct: 355 SVPARVLFVIPGDPP-KIAVSFLPHVLTFNFATPNTPHPDQL 395


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 2/114 (1%)
 Frame = -1

Query: 540 TYGFFSRYLHRTGLLAGPSTSTCGDVGESTLNVYASPT--DTFSGGSPDPAPITRAGADT 367
           T G  S  L  T      STS     G S+L+   +PT   T +  +  P P T   +  
Sbjct: 100 TTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTD 159

Query: 366 *HTNGLPGT*SPLKRSSTV*GLGSRGVKLMAYV*APCVPLQSVPVRHSPSPLNS 205
            ++N LP T +    S+++   G  G   ++    P VP  S      P P  S
Sbjct: 160 TNSNPLPTTSTSCTTSTSIPPTG--GSSSLSTPITPTVPPTSTSSTSIPIPPTS 211


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1024

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 45   EHRLNVLIDSVPIPASPFHLKVYDVSAIRVK 137
            EH L VL+D+V +  SPF  ++ ++  +R K
Sbjct: 927  EHSLKVLLDNVTVEKSPF-AQLEELEVVRKK 956


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 215 GDGEWRTGTDCSGTQGAHTYAISF-TPRDPRPHTVELRFNG 334
           G  E  +G    GT+   T +++F TP +  P T  LRFNG
Sbjct: 159 GGAELLSGNVSYGTRNRSTMSVNFETPVNADPKT-RLRFNG 198


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 283 LHAAGSEASHR*AAFQRRSRAWQSI 357
           LH     ++H  AA +R SR+W SI
Sbjct: 20  LHVLNDLSAHDLAALERVSRSWNSI 44


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 10  PSELSSCRAPSGNTDSTYLSTLCPFRPVPS 99
           PS LS   +PSGN+  T  S   PF P PS
Sbjct: 267 PSNLSKQFSPSGNSPLTEASK--PFVPQPS 294


>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 323 RFNGDHVPGSPFVCHVSAPARVIGAGSGEPPEKVSVGD 436
           +F+     GSPFVC +     + G   G P  K+S+G+
Sbjct: 36  KFDSSVDRGSPFVCTIGVGQLIRGWDEGVP--KMSLGE 71


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 1   VLPPSELSSCRAPSGNTDSTYLSTLC 78
           V+PP E S CRA     +   L+  C
Sbjct: 78  VIPPGESSKCRAMKAEIEDWLLTQSC 103


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 511 VQVSAEETVGENEASKRYTISFVPV 585
           V +  EE VG  E  K+  +SFVP+
Sbjct: 130 VDLPPEEAVGFREECKKQGVSFVPL 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,221
Number of Sequences: 5004
Number of extensions: 53690
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)