Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0824
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0665 - 5745741-5746881,5747188-5747297 31 0.69
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 31 0.69
09_06_0071 - 20675501-20675830,20676120-20676286,20676472-206766... 31 0.92
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 30 1.6
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 29 2.1
06_03_1142 + 27961999-27962263,27963735-27965080,27965158-279654... 29 2.1
10_08_0048 - 14441540-14441620,14442044-14442111,14442275-144424... 29 2.8
09_04_0697 + 19566182-19566851,19567565-19567598,19567677-195677... 29 2.8
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875... 29 2.8
05_03_0162 - 9050981-9051003,9051141-9052273,9052388-9053310,905... 29 3.7
11_01_0180 - 1431758-1431838,1431975-1432061,1432180-1432230,143... 28 4.9
06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,706... 28 4.9
11_03_0161 - 10949552-10950925 28 6.5
05_03_0008 + 7332224-7332700,7335136-7335153,7335747-7335848,733... 28 6.5
04_03_0039 - 10024789-10025223 28 6.5
12_01_0180 - 1335825-1335980,1336584-1336670,1336767-1336859,133... 27 8.5
11_01_0324 - 2428035-2428514 27 8.5
08_01_0371 - 3284103-3284582 27 8.5
02_02_0610 - 12113162-12113965 27 8.5
>08_01_0665 - 5745741-5746881,5747188-5747297
Length = 416
Score = 31.1 bits (67), Expect = 0.69
Identities = 30/88 (34%), Positives = 36/88 (40%)
Frame = +3
Query: 27 VPRAVGEHRLNVLIDSVPIPASPFHLKVYDVSAIRVKDVAHGTVGKPVTFLVETMAAGPG 206
V RAV HRL +V P SP+H VY R VAHG + V A G G
Sbjct: 208 VERAV--HRLIRSGMAVDPPCSPYHAFVYTAFQERATAVAHGNTARLVG------ARGHG 259
Query: 207 NLEVTVNGGRVPTAAARKELTHTPSASR 290
+ + G V R E +T SR
Sbjct: 260 DAALARVCGTVAADEKRHEAAYTRIVSR 287
>07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 31.1 bits (67), Expect = 0.69
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 344 PGSPFVCHVSAPARVIGAGSGEPPEKV-SVGDAYTFSVDSPT-SPHVEVLGPARRPVLCK 517
PG F C ++P +VIG + E + + + D T SP VE LG + P CK
Sbjct: 1096 PGISFHCLDNSPVQVIGINNNEGTSRTHCIQNVKKRRFDDVTNSPDVEYLGHSTFPDCCK 1155
Query: 518 YL 523
L
Sbjct: 1156 VL 1157
>09_06_0071 -
20675501-20675830,20676120-20676286,20676472-20676619,
20676768-20677205,20677667-20677741,20678000-20678283,
20678940-20679159
Length = 553
Score = 30.7 bits (66), Expect = 0.92
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 588 INRHK*DGVPFARLIFTYGFFSRYLHRTGLLAGPSTSTCGD 466
+N H D V + + +F FFS Y +R + P S GD
Sbjct: 156 VNAHPSDNVFYIQFVFIVAFFSHYQYRLLRMIYPQCSKVGD 196
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 344 PGSPFVCHVSAPARVIGAGSGEPPEKV-SVGDAYTFSVDSPT-SPHVEVLGPARRPVLCK 517
PG F C ++P +VIG + E + + + D T SP VE LG + P CK
Sbjct: 656 PGISFHCLDNSPIQVIGINNNEGTSRTHCIQNVKKRRFDDVTNSPDVEYLGHSIFPDCCK 715
Query: 518 YL 523
L
Sbjct: 716 VL 717
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 102 LKVYDVSAIRVKDVAHGTVGKPV 170
LK D+SA+R++ V HG KPV
Sbjct: 222 LKKSDISALRLRQVIHGAYDKPV 244
>06_03_1142 +
27961999-27962263,27963735-27965080,27965158-27965435,
27965706-27965737,27965830-27966236,27966373-27966858
Length = 937
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 392 GAGSGEPPEKVSVGDAYTF 448
GAG+GE P +VS+G YT+
Sbjct: 22 GAGAGERPSEVSIGALYTY 40
>10_08_0048 -
14441540-14441620,14442044-14442111,14442275-14442493,
14442506-14444508,14447541-14448410,14448533-14448576,
14449920-14450093
Length = 1152
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 335 DHVPGSPFVCHVSAPARVIGAGSGE-PPEKVSVGDAYTFSVDSPTSP 472
DH G +SAP ++ + SGE PE V + T S TSP
Sbjct: 112 DHGGGGGGAAAISAPKLLVPSSSGEASPEAVLMSPTSTLQTASATSP 158
>09_04_0697 +
19566182-19566851,19567565-19567598,19567677-19567725,
19567891-19567949,19568063-19568079,19568178-19568329,
19568459-19568548,19568793-19568886,19568976-19569127,
19569630-19569727,19570049-19570184,19570695-19570793,
19570898-19571029
Length = 593
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 456 STLNVYASPTDTFSGGS-PDPAPITRAGADT 367
S L + A+P TF G+ P P P+ R G DT
Sbjct: 88 SCLGLPAAPASTFLAGAIPYPLPLPRGGGDT 118
>04_04_1189 + 31586991-31587291,31587358-31587397,31587449-31587534,
31587535-31588097,31588250-31589913,31589956-31590066,
31590152-31591181,31591234-31591406,31591535-31591814,
31592275-31592331
Length = 1434
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 286 EADGVCVSSLRAAAVGTRPPFTVTSKFPGPAAIVSTKKVTGLPTVP 149
+ D C+S LR + P ++ P P+A+ S + G+PT P
Sbjct: 982 QGDKECLSGLRELTIHDCPCLVLSYPLP-PSALTSHFSIKGIPTYP 1026
>05_03_0162 -
9050981-9051003,9051141-9052273,9052388-9053310,
9053560-9054615
Length = 1044
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 359 VCHVSAPARVIGAGSGEPPEKVSVGDAYTFSVDSPTSPH 475
+CH+ A R G GS PP +S D+ F + +P H
Sbjct: 81 LCHLKAMQRG-GVGSSAPPVNISCLDSLLFCLRNPLFAH 118
>11_01_0180 -
1431758-1431838,1431975-1432061,1432180-1432230,
1432275-1432367,1432496-1432568,1432657-1432751,
1433428-1433515,1433647-1433936
Length = 285
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 428 PTPSPEARPILHRSRALAPTR 366
PTP P A P+LH R P+R
Sbjct: 18 PTPRPTAPPLLHSRRLTLPSR 38
>06_01_0916 +
7058991-7059050,7060057-7061235,7061778-7063481,
7063557-7064432,7064457-7064660,7065039-7065143,
7065407-7065496,7066066-7066176,7066349-7066780
Length = 1586
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 247 QRHARSSHIRHQLHAAGSEASHR*AAFQRRSRAWQSIRVSRV 372
++HAR+ IR QL + + R + R WQ++R S++
Sbjct: 640 EKHARALRIRSQLESERVQRLQRTSEKLNRVNEWQAVRSSKL 681
>11_03_0161 - 10949552-10950925
Length = 457
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 495 AGPSTSTCGDVGESTLNVYASPTDTFSGGSP 403
A P T T GD+ + + + T T SGGSP
Sbjct: 31 ASPVTVTLGDLPQQKRSAATATTTTSSGGSP 61
>05_03_0008 +
7332224-7332700,7335136-7335153,7335747-7335848,
7336927-7337202,7337474-7337674
Length = 357
Score = 27.9 bits (59), Expect = 6.5
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Frame = +2
Query: 221 GEWRTGTDCSGTQGA---HTYAIS-FTPRDPRPHTVELRFNGDHVPGSPFVCHVSAPARV 388
GE G++ GT G H ++IS T R L+ N H P SP ++P+R
Sbjct: 251 GESEAGSN-QGTPGRPLHHVHSISPSTASFARSPFGSLQHNSGHTPRSPATFSTASPSRF 309
Query: 389 IGAGS-GEPPEKVSVG-DAYTFSVDSPT 466
G+ G P S+ F SP+
Sbjct: 310 AATGNQGHPIGHPSISLPGINFVASSPS 337
>04_03_0039 - 10024789-10025223
Length = 144
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 328 QRRSRAWQSIRVSRVGASARDR-CRIGRASGEGVGW 432
+ + W S R SR S DR CR A G+GV W
Sbjct: 56 EAEDKRWGSWRASRRRGSVADRRCRGRVAGGKGVRW 91
>12_01_0180 -
1335825-1335980,1336584-1336670,1336767-1336859,
1336985-1337057,1337153-1337247,1337917-1338004,
1338135-1338424
Length = 293
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 428 PTPSPEARPILHRSRALAPTR 366
PTP P A P+LH R P R
Sbjct: 18 PTPRPTAPPLLHSRRLALPPR 38
>11_01_0324 - 2428035-2428514
Length = 159
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 146 ARYCR*TCHFFSGDNGRWSWEFRGDGEWRTGTDCSG 253
A CR C G + R+ FR DG WR G D G
Sbjct: 74 AGMCRHRCT--EGHHLRYRCCFRSDGRWRKGDDRGG 107
>08_01_0371 - 3284103-3284582
Length = 159
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 210 LEVTVNGGRVPTAAARKEL-THTPSASRRGIRGLTPLSCVSTAITCLAVHSCVTCRR 377
L T GG P RK T+ + RRG PL+C+++ + + S +T RR
Sbjct: 64 LRRTATGGAPPMLPQRKRCPTNRRAMLRRGGARSGPLNCMASPSSATSRASAMTMRR 120
>02_02_0610 - 12113162-12113965
Length = 267
Score = 27.5 bits (58), Expect = 8.5
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Frame = +3
Query: 3 PAAFRAEFVPRAVGEHRLNVLIDSVPIP-----ASPFHLKVYDVSAIRVKDVAHGTVGKP 167
PA V G+ +NV +P ++ F L VY V + + + G P
Sbjct: 133 PAGVYTVNVTTTTGQSLVNVSTGVAAVPLGTTLSADFPLAVYSVDGVLLPEQMFGKAKAP 192
Query: 168 VTFLVETMAAGPGNLEVTVNGGRVP 242
AAG G + GG +P
Sbjct: 193 APAAAPASAAGKGANKEHKKGGAMP 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,122,444
Number of Sequences: 37544
Number of extensions: 479877
Number of successful extensions: 1867
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1866
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -