Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0824
         (594 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    31   0.037
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    28   0.26 
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    26   1.1  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    25   1.4  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         25   2.4  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    25   2.4  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   2.4  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   4.3  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    23   7.4  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            23   9.8  
AY146744-1|AAO12104.1|  176|Anopheles gambiae odorant-binding pr...    23   9.8  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   9.8  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    23   9.8  

>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 30.7 bits (66), Expect = 0.037
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 537 YGFFSRYLHRTGLLAGPSTSTCGDVGES 454
           +GFF  +LHR G +  P    CGD  ++
Sbjct: 901 HGFFRSHLHRMGYVPSPVCPACGDENQT 928


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 27.9 bits (59), Expect = 0.26
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -3

Query: 418 LRRLARSCTDHARWRRHVTH-EWTARHVIAVETQL--NGVRPRIPR-READGVCVSSLRA 251
           +R L     DH +WR HVT     A  V+A  T+L  N   PR  + R    V  S LR 
Sbjct: 790 IRYLGVQLQDHLKWRDHVTKVSEKASRVVAAVTRLMQNHSGPRTAKSRLLAYVAESVLRY 849

Query: 250 AA 245
           AA
Sbjct: 850 AA 851


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -3

Query: 430 NRHLLRRLARSCTDHARWRRHVTHE-WTARHVIAVETQL--NGVRPRI-PRREADGVCVS 263
           ++  +R L     DH  WR HVT     A  V+ V T +  N   PR+  RR   GV  +
Sbjct: 730 SKQAIRYLGVMIHDHFLWRPHVTMAVEKANRVVKVVTNVMRNHSGPRVAKRRLLAGVSEA 789

Query: 262 SLRAAA 245
            +R  A
Sbjct: 790 IIRYGA 795


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1009

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -1

Query: 591  DINR---HK*DGVPF--ARLIFTYGFFSRYLHRTGLLAGPSTSTCGDVGESTLNVY 439
            D+NR    +  GV F  ++ + ++GF++  LHR  L   P    C +  ++   ++
Sbjct: 873  DVNRWISRRFGGVDFFLSQFLSSHGFYAYQLHRMQLTGSPLCDACEEPEDAEHTIF 928


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 249  LQSVPVRHSPSPLNSQDQRPLSPLK 175
            ++ +P+R  P  LNS ++  L+P K
Sbjct: 1902 IRVLPIREPPVKLNSNNETALTPYK 1926


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 537 YGFFSRYLHRTGLLAGPSTSTCGDVGESTLNV 442
           +G F  YLH+    + P    C  + EST +V
Sbjct: 890 HGCFRSYLHKYRHASSPDCPACVSIVESTEHV 921


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 555  ARLIFTYGFFSRYLHRTGLLAGPSTSTCGDVGES 454
            +++I  +GFF +YL      + P    C  V ES
Sbjct: 936  SQIISGHGFFRKYLADMKFTSSPDCPNCPGVRES 969


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
            differentiation regulator protein.
          Length = 1283

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = -3

Query: 253  AAAVGTRPPFTVTSKFPGPAAIVSTKKVTGLPTVPCATSLTLIADTSYTFRWKGLAGMGT 74
            AAA G  PP     + P   A   T++   LP  P A S   +  T ++     +  + +
Sbjct: 913  AAATGPPPPTHRLEQPPQVVAAAPTQQQP-LPPAPAAASSAGVQPTEHSVNSTNVTSINS 971

Query: 73   ESIST 59
             S S+
Sbjct: 972  SSSSS 976


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 430 NRHLLRRLARSCTDHARWRRHVTHEWTARHVIAVETQLNGV 308
           ++  +R L     DH  WR HV  E  A   + V   L G+
Sbjct: 736 SKRSIRYLGVMLHDHLSWRPHV--EMVADKALRVVRALRGI 774


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 252 PLQSVPVRHSPSPLNSQDQRPLSPLKK 172
           P+ S+PVR SP P     + P +P KK
Sbjct: 363 PVPSLPVRSSPEPSPVLLRSP-TPAKK 388


>AY146744-1|AAO12104.1|  176|Anopheles gambiae odorant-binding
           protein AgamOBP8 protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 462 LRHRTSRCLAPPGDPSCASIC*R 530
           +R  TSRCL  P  P     C R
Sbjct: 138 IRSETSRCLREPPAPDSGGGCLR 160


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -1

Query: 555  ARLIFTYGFFSRYLHRTGLLAGPSTSTCGDVGESTLNV 442
            ++++  +G+F  YLH  G         C    ES  +V
Sbjct: 926  SQVLTGHGYFREYLHVCGFAPSAECPRCPGSVESVAHV 963


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 79  GTESISTLSLCSPTARGTNSAR 14
           G  SI  +S CSP+  G N+ R
Sbjct: 175 GRNSIVDVSFCSPSLVGDNNWR 196


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 685,682
Number of Sequences: 2352
Number of extensions: 15545
Number of successful extensions: 52
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57188952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)