Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0824
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   0.98 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   3.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   3.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   3.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   6.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   9.1  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 109 YTMYQL*ESRMSRTVLSV--NLSLF*WRQWPLVLGI 210
           Y ++ L  S +   VL +   LSLF W+Q+P VLG+
Sbjct: 77  YYLFSLAISDLILLVLGLPNELSLF-WQQYPWVLGV 111


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 229  PFTVTSKFPGPAAIVSTKKVTGLPTVP 149
            PFT     PGP  I     + G+P +P
Sbjct: 1131 PFTSPGGIPGPNGIKMPSFMEGMPHLP 1157



 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 7    PPSELSSCRAPSGNTDSTYLST 72
            PP+ LS  RA S + DST  ST
Sbjct: 1397 PPTPLSISRAGSRDEDSTRDST 1418


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 204 GNLEVTVNGGRVPTAA-ARKELTHTPSASRRGIRGLTP 314
           G LE T+NG     AA A + L H P      + G+TP
Sbjct: 365 GTLENTINGRADEEAAPAPQHLIH-PGKDINKLYGMTP 401


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 204 GNLEVTVNGGRVPTAA-ARKELTHTPSASRRGIRGLTP 314
           G LE T+NG     AA A + L H P      + G+TP
Sbjct: 365 GTLENTINGRADEEAAPAPQHLIH-PGKDINKLYGMTP 401


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 204 GNLEVTVNGGRVPTAA-ARKELTHTPSASRRGIRGLTP 314
           G LE T+NG     AA A + L H P      + G+TP
Sbjct: 303 GTLENTINGRADEEAAPAPQHLIH-PGKDINKLYGMTP 339


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 105 KVYDVSAIRVKDVAHGTVGKPVTFLVETMAAGPGNLEVTVNGGRV 239
           K  +++A + +  +H    K +++L +      G+LEV V  GRV
Sbjct: 451 KSLNLAAQKREYYSHYVAFKSLSYLKKQPVIANGSLEVDVIDGRV 495


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 340 RAWQSIRVSRVGA 378
           RAW+SI V  +GA
Sbjct: 307 RAWESIIVGMIGA 319


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 549 LIFTYGFFSRYLHRTGLLAGPSTSTC 472
           +I   G    YL+   LLA P+T TC
Sbjct: 555 IILLAGVLVCYLNTFLLLATPTTVTC 580


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +1

Query: 457  LAYVTARRGAWPRQETRPVQVSAEETVGENEASKRYTISFV 579
            L Y     G W +QE     +     + E + + RYTI  +
Sbjct: 943  LQYKEGDAGIWQQQEFTGPPLPYAALIDELKPATRYTIRVI 983


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 258 CVPLQSVPVRHSPSPLNSQDQ 196
           C P  + P+  +P PL  Q +
Sbjct: 213 CPPTLACPLNPNPQPLTGQQE 233


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +1

Query: 457  LAYVTARRGAWPRQETRPVQVSAEETVGENEASKRYTISFV 579
            L Y     G W +QE     +     + E + + RYTI  +
Sbjct: 939  LQYKEGDAGIWQQQEFTGPPLPYAALIDELKPATRYTIRVI 979


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 549 LIFTYGFFSRYLHRTGLLAGPSTSTC 472
           +I   G    YL+   LLA P+T TC
Sbjct: 645 IILLAGVLVCYLNTFLLLATPTTVTC 670


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 37  PSGNTDSTYLSTLCPF 84
           PS N+ +  LST CP+
Sbjct: 622 PSLNSTNVTLSTKCPY 637


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 558 FARLIFTYGFFS 523
           FARL F  GFF+
Sbjct: 10  FARLFFIIGFFN 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,086
Number of Sequences: 438
Number of extensions: 3967
Number of successful extensions: 21
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)