Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0824
(594 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 30 1.3
At1g32560.1 68414.m04018 late embryogenesis abundant group 1 dom... 29 1.8
At2g22780.1 68415.m02702 malate dehydrogenase, glyoxysomal, puta... 29 3.1
At5g35980.1 68418.m04333 protein kinase family protein contains ... 28 4.1
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 28 4.1
At3g15730.1 68416.m01993 phospholipase D alpha 1 / PLD alpha 1 (... 28 5.4
At5g39030.1 68418.m04723 protein kinase family protein contains ... 27 7.1
At4g32695.1 68417.m04654 hypothetical protein hypothetical prote... 27 7.1
At1g33720.1 68414.m04169 cytochrome P450, putative similar to SP... 27 7.1
At5g19330.1 68418.m02303 armadillo/beta-catenin repeat family pr... 27 9.4
At1g33730.1 68414.m04170 cytochrome P450, putative Similar to cy... 27 9.4
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 326 FNGDHVPGSPFVCHVSAPARVIGAGSGEPPEKVS---VGDAYTFSVDSPTSPHVEV 484
F D++ G + V+GAGS P E +S V D T S+D P+S + E+
Sbjct: 4774 FRNDNISGVESGSQNPHGSNVLGAGSTAPQENLSATDVTDELTDSMDLPSSSNTEM 4829
>At1g32560.1 68414.m04018 late embryogenesis abundant group 1
domain-containing protein / LEA group 1
domain-containing protein contains Pfam domain, PF03760:
Late embryogenesis abundant (LEA) group 1
Length = 134
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +2
Query: 335 DHVPGSPFVCHVSAPARVIGAGSGEPPEKVSVGDAYTFSVDSPTSPH 475
DH P P V APA V+G G G P V+ T+ P + H
Sbjct: 82 DHGPHVPQQAPVPAPAPVMGHGYGHNPTGVTSVPPQTYHPTYPPTGH 128
>At2g22780.1 68415.m02702 malate dehydrogenase, glyoxysomal,
putative strong similarity to glyoxysomal malate
dehydrogenase (EC 1.1.1.37) SP|P19446 {Citrullus
lanatus}, SP|P46488 {Cucumis sativus}, [Medicago sativa]
GI:2827078, SP|Q42972 {Oryza sativa}, SP|Q9ZP05
{Arabidopsis thaliana}, SP|P37228 {Glycine max};
contains InterPro entry IPR001236: Lactate/malate
dehydrogenase
Length = 354
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +3
Query: 18 AEFVPRAVGEHRLNVLIDSVPIPASPFHLKVYDVSAIRVKDVAHGTVGKPVTFLVETMAA 197
A+ P+A+ N + +VPI A F K ++ V V + TF+ E M+
Sbjct: 147 AKCCPKAIVNIISNPVNSTVPIAAEVFK-KAGTFDPKKLMGVTMLDVVRANTFVAEVMSL 205
Query: 198 GPGNLEVTVNGG 233
P +EV V GG
Sbjct: 206 DPREVEVPVVGG 217
>At5g35980.1 68418.m04333 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 956
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 287 TPRDPRPHTVELRFNGDHVPGSPFVCHVS--APARVIGAGSGEPPEKVSVG 433
+P PH RF G H+PGS ++ HVS +P+R+ +PP++ + G
Sbjct: 847 SPPSNDPHA---RF-GQHIPGSQYIPHVSQNSPSRL----GQQPPQRYNHG 889
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 213 EVTVNGGRVPTAAARKELTHTPSASRRGIRGLTP--LSCVSTAITCLAVHSCVTC 371
E+TV+GG+VP E T P+ R P LS V AI L + V C
Sbjct: 148 EITVSGGQVPPPLMSFEATGLPNELLRECPNFMPYALSFVPGAIFALGGANVVRC 202
>At3g15730.1 68416.m01993 phospholipase D alpha 1 / PLD alpha 1
(PLDALPHA1) (PLD1) / choline phosphatase 1 identical to
SP:Q38882 Phospholipase D alpha 1 (EC 3.1.4.4)
(AtPLDalpha1) (PLD alpha 1) (Choline phosphatase 1)
(Phosphatidylcholine-hydrolyzing phospholipase D 1)
(PLDalpha) [Arabidopsis thaliana]
Length = 810
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 99 HLKVYDVSAIRVKDVAHGTVGKPVTFLVETMAAGPGNLEV 218
H +Y+V A+ V G +GK + + ET+ G G ++
Sbjct: 11 HATIYEVDALHGGGVRQGFLGKILANVEETIGVGKGETQL 50
>At5g39030.1 68418.m04723 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 806
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -3
Query: 196 AAIVSTKKVTGLPTVPCATSLTLIADTSYTF 104
+++VS K+ +G+P VP T+ +D +Y+F
Sbjct: 63 SSVVSYKEESGIPQVPYMTARIFRSDFTYSF 93
>At4g32695.1 68417.m04654 hypothetical protein hypothetical protein
yjbI, Bacillus subtilis, PIR2:A69844
Length = 412
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 222 VNGGRVPTAAARKELTHTPSASRRGIRGLT 311
++ R P ++ E +HTPS+S R GL+
Sbjct: 354 ISNMRKPVGSSESEESHTPSSSHRNYDGLS 383
>At1g33720.1 68414.m04169 cytochrome P450, putative similar to
SP|O64636 Cytochrome P450 76C1 (EC 1.14.-.-)
{Arabidopsis thaliana}; contains Pfam profile PF00067:
Cytochrome P450
Length = 511
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -3
Query: 166 GLPTVPCATSLTLIADTSYTFRWKGLAGMGTESISTLSLCSPTARGTN 23
GLP L ++A YTF WK G+G+E + T TN
Sbjct: 452 GLPLAMKTVHL-MLASLLYTFEWKLPNGVGSEDLDMEETFGLTVHKTN 498
>At5g19330.1 68418.m02303 armadillo/beta-catenin repeat family
protein / BTB/POZ domain-containing protein contains
armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
BTB/POZ domain, Pfam:PF00651
Length = 710
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 36 AVGEHRLNVLIDSVPIPASPFHLKV--YDVSAIRVKDVAHGTVGKPVTFLVETMAAGPGN 209
A E +NV++D +PA HL+ Y+ + K H V K F + +A P
Sbjct: 82 AKNEDLVNVIVDGGAVPALMTHLQAPPYNDGDLAEKPYEH-EVEKGSAFALGLLAIKPEY 140
Query: 210 LEVTVNGGRVP 242
++ V+ G +P
Sbjct: 141 QKLIVDKGALP 151
>At1g33730.1 68414.m04170 cytochrome P450, putative Similar to
cytochrome P450 76C2 (SP:O64637)[Arabidopsis thaliana];
contains Pfam profile: PF00067 cytochrome P450
Length = 368
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -3
Query: 166 GLPTVPCATSLTLIADTSYTFRWKGLAGMGTESISTLSLCSPTARGTN 23
GLP + T ++A YTF WK G+G+E + T TN
Sbjct: 316 GLP-LALKTVHLMLASLLYTFEWKLPNGVGSEDLDMGETFGLTVHKTN 362
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,897,865
Number of Sequences: 28952
Number of extensions: 317534
Number of successful extensions: 1063
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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