Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0823
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin p...    30   1.8  
AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin p...    30   1.8  
Z73102-6|CAA97412.1|  522|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    28   5.6  
AC006645-9|AAF39841.2|  293|Caenorhabditis elegans Nematode asta...    28   5.6  
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    27   9.8  
AL132898-20|CAC14415.2|  243|Caenorhabditis elegans Hypothetical...    27   9.8  
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 252 EKAEPAPVSNDEVPAIPEAKKDDIAPEDSDI 344
           E   P P   +E+P +PE  ++   P DS+I
Sbjct: 532 EDTTPGPAVTEEIPEVPEPTEEPPTPTDSEI 562


>Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 252 EKAEPAPVSNDEVPAIPEAKKDDIAPEDSDI 344
           E   P P   +E+P +PE  ++   P DS+I
Sbjct: 532 EDTTPGPAVTEEIPEVPEPTEEPPTPTDSEI 562


>U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical
           protein PAR2.4b protein.
          Length = 606

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +1

Query: 130 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 246
           V++ +PVA EKDV+PA+ +L    ++   + PTE A  T
Sbjct: 317 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 353


>U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical
           protein PAR2.4a protein.
          Length = 804

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +1

Query: 130 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 246
           V++ +PVA EKDV+PA+ +L    ++   + PTE A  T
Sbjct: 515 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 551


>AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin
           polymerizing factor-S protein.
          Length = 606

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +1

Query: 130 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 246
           V++ +PVA EKDV+PA+ +L    ++   + PTE A  T
Sbjct: 317 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 353


>AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin
           polymerizing factor protein.
          Length = 804

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +1

Query: 130 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 246
           V++ +PVA EKDV+PA+ +L    ++   + PTE A  T
Sbjct: 515 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 551


>Z73102-6|CAA97412.1|  522|Caenorhabditis elegans Hypothetical
           protein B0035.5 protein.
          Length = 522

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 521 EKPSATDAEGSADSAAIIPNMVKKIDLAPNVESDAAAVPEIKTPEAAR 664
           EKP++ +AE   D    +    K ++L   V     A PE   PEA++
Sbjct: 280 EKPASLNAEDIRDEKVKVLKAAKVVELKDVVVGQYIASPEFDHPEASQ 327


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +3

Query: 399 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEFQKKKNLVLLMQKVL 554
           K SE      K+ D KVE+   + E +K E Q    EFQK+   V  ++K L
Sbjct: 715 KESEEVKKTGKNKD-KVEKTKEEVEKAKEEFQKVKEEFQKEVEKVKKVEKEL 765


>AC006645-9|AAF39841.2|  293|Caenorhabditis elegans Nematode astacin
           protease protein 2 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 193 VAPKIDDSVKPTEVAAATEEKKPNL-LQLVTTRYPLYQRPK 312
           VAPK+ +  K  E+A +T+ +K    ++L+ T+ P ++  K
Sbjct: 15  VAPKVLEPEKDDEIAVSTQREKTFFDMKLILTKLPTFEPSK 55


>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
            protein Y51H4A.12 protein.
          Length = 1677

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +3

Query: 399  KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEFQKKKN 527
            K+ E+   E ++++   +E +  PE+ K   + T AE+  +++
Sbjct: 1501 KTEEVDGIEREASESSSKESSVAPEEKKNPKKITFAEYNSRRS 1543


>AL132898-20|CAC14415.2|  243|Caenorhabditis elegans Hypothetical
           protein Y59A8B.19 protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +1

Query: 82  SIFKMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAATEEKKP 261
           SIF +  L+ C+A    S  +P  E    VP  P +     I D V+   V     E   
Sbjct: 3   SIFYLLALIACVANFGFSQDLPAPE----VPEIPEVPDVGAITDQVQVEAVLKLVTELLA 58

Query: 262 NLLQLVTT 285
            +L+LVT+
Sbjct: 59  TVLKLVTS 66


>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
            protein F15E6.1 protein.
          Length = 1655

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +3

Query: 399  KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEFQKKKN 527
            K+ E+   E ++++   +E +  PE+ K   + T AE+  +++
Sbjct: 1480 KTEEVDGIEREASESSSKESSVAPEEKKNPKKITFAEYNSRRS 1522


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,160,618
Number of Sequences: 27780
Number of extensions: 235742
Number of successful extensions: 935
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)