Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0822
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    31   0.82 
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    31   0.82 
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    31   0.82 
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    28   4.4  
AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical...    27   7.6  
AC006674-11|AAF39936.1|  309|Caenorhabditis elegans Hypothetical...    27   7.6  

>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 25/78 (32%), Positives = 40/78 (51%)
 Frame = +1

Query: 28   AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 207
            A A   ++K++  KH AD   + + D++L  +      K +++ LKK A   L K     
Sbjct: 7269 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7324

Query: 208  KDGKFKKDVALAKVPKLK 261
            KD K K++ A AK+ K K
Sbjct: 7325 KDDKLKQE-ADAKLKKEK 7341


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 25/78 (32%), Positives = 40/78 (51%)
 Frame = +1

Query: 28   AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 207
            A A   ++K++  KH AD   + + D++L  +      K +++ LKK A   L K     
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344

Query: 208  KDGKFKKDVALAKVPKLK 261
            KD K K++ A AK+ K K
Sbjct: 7345 KDDKLKQE-ADAKLKKEK 7361


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 25/78 (32%), Positives = 40/78 (51%)
 Frame = +1

Query: 28   AQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 207
            A A   ++K++  KH AD   + + D++L  +      K +++ LKK A   L K     
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344

Query: 208  KDGKFKKDVALAKVPKLK 261
            KD K K++ A AK+ K K
Sbjct: 7345 KDDKLKQE-ADAKLKKEK 7361


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 215 PSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTSCSSAFVS 90
           P  ++S  L S      +N + +VLK+  + L+ SC++ FVS
Sbjct: 14  PFYLLSLCLFSTMYILIYNFTTNVLKAMRYFLYASCTATFVS 55


>AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical
           protein K12H6.6b protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 248 TLARATSFLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTSC 108
           T  R T  LN  +LV+   +++++  YF   SFS+  SP +   T C
Sbjct: 202 TAFRVTVILNIITLVVFRLIVNVYMIYFVFASFSM--SPWYIASTIC 246


>AC006674-11|AAF39936.1|  309|Caenorhabditis elegans Hypothetical
           protein K12H6.6a protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 248 TLARATSFLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTSC 108
           T  R T  LN  +LV+   +++++  YF   SFS+  SP +   T C
Sbjct: 202 TAFRVTVILNIITLVVFRLIVNVYMIYFVFASFSM--SPWYIASTIC 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,828,420
Number of Sequences: 27780
Number of extensions: 284368
Number of successful extensions: 742
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)