Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0822
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr...    33   0.14 
At4g19230.2 68417.m02837 cytochrome P450 family protein cytochro...    31   0.44 
At1g57760.1 68414.m06553 expressed protein                             31   0.58 
At4g02710.1 68417.m00366 kinase interacting family protein simil...    31   0.77 
At5g31412.1 68418.m03722 hypothetical protein contains Pfam doma...    28   4.1  
At5g64710.2 68418.m08135 expressed protein contains Pfam profile...    28   5.4  
At5g64710.1 68418.m08134 expressed protein contains Pfam profile...    28   5.4  
At2g45340.1 68415.m05642 leucine-rich repeat transmembrane prote...    28   5.4  
At2g28370.1 68415.m03448 expressed protein contains Pfam PF04535...    28   5.4  
At2g04230.1 68415.m00410 F-box family protein contains F-box dom...    27   9.4  
At1g48180.1 68414.m05378 expressed protein ; expression supporte...    27   9.4  

>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
           protein precursor - Plasmodium falciparum, PIR2:A54514
          Length = 504

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = +1

Query: 43  DEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGK 219
           D  K  +K+H   CLA  + DE   N L+T + K +  P+K+ A   L K     KDGK
Sbjct: 77  DVHKSFVKQHLVQCLAGAENDETSENSLET-EKKDDVTPVKEAA--ELSKEHTTKKDGK 132


>At4g19230.2 68417.m02837 cytochrome P450 family protein cytochrome
           P450, Arabidopsis thaliana; supported by cDNA:
           gi_15293092_gb_AY050980.1_
          Length = 484

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -2

Query: 378 ERASGLSRGSISRNSRLFGEGCCLCWPGKRQS 283
           ERA+G S G    +SR     C LCWPG R+S
Sbjct: 439 ERATGFSMG----HSRFPKTDCPLCWPGSRRS 466


>At1g57760.1 68414.m06553 expressed protein
          Length = 278

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
 Frame = -2

Query: 321 EGCCLCWPGKRQSASLLSICLQLRHFS--QSDVLLEFPVLGHQLRFDQHT*SVLLQWFVF 148
           E   LC   K Q  S     L L  +S   +   L F +    LR D+   S LL +   
Sbjct: 104 ESVLLCAQAKIQETSRYERDLDLDDYSFMVASSTLRFDLSPLLLRIDRVASSGLLIFAAT 163

Query: 147 SLKVACLQFVHQLFISFRLGETVGSVFLQVLLLLICEGLSQD 22
              +  + F   +  S RL E + S F+ +LLL+I  G+S D
Sbjct: 164 KFTIKLILFHANIASSSRLLEILSS-FVLILLLMILSGISGD 204


>At4g02710.1 68417.m00366 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1111

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 459 LDKHVRASYLTLMRYGTVGL-DYVFTRKERASGLSRGSISRNSRLFGEGCCL 307
           ++K  R+  + L+      L DYVFT +E A  +S+G+   +  L  EG CL
Sbjct: 760 IEKLKRSQTIVLLNESIKSLEDYVFTHRESAGEVSKGADLMDEFLKLEGMCL 811


>At5g31412.1 68418.m03722 hypothetical protein contains Pfam domain,
           PF04937: Protein of unknown function (DUF 659)
          Length = 433

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +1

Query: 70  HRADCLAETKADEQLVNKLKT-GDFKTENEPLKKYALCMLIKSQLMTKD-GKFKKDVALA 243
           H  D + E  +    + K++T GD+K EN  L +Y  C+L    +  +D G   K + LA
Sbjct: 227 HTVDLMLEAISKLPKMGKMQTFGDYKGENLFLNRYESCVLEWCDVCVEDFGPLMKLLRLA 286


>At5g64710.2 68418.m08135 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 716

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +1

Query: 19  VVLAQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLI--- 189
           VV  + +    K+N K  + +     ++ ++ V  +K  D K + EP+K   L +     
Sbjct: 237 VVSVEKMCQNMKQNDKDVKEESHQLQESSQEFVQVMKLMDVKAKEEPVKANQLAITAVDD 296

Query: 190 KSQLMTKDGKFKK 228
            S    KDG  KK
Sbjct: 297 VSSFEEKDGFLKK 309


>At5g64710.1 68418.m08134 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 841

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +1

Query: 19  VVLAQALTDEQKENLKKHRADCLAETKADEQLVNKLKTGDFKTENEPLKKYALCMLI--- 189
           VV  + +    K+N K  + +     ++ ++ V  +K  D K + EP+K   L +     
Sbjct: 362 VVSVEKMCQNMKQNDKDVKEESHQLQESSQEFVQVMKLMDVKAKEEPVKANQLAITAVDD 421

Query: 190 KSQLMTKDGKFKK 228
            S    KDG  KK
Sbjct: 422 VSSFEEKDGFLKK 434


>At2g45340.1 68415.m05642 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 691

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/68 (23%), Positives = 37/68 (54%)
 Frame = -3

Query: 296 ASVNQLLYFQFVFSLGTLARATSFLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLF 117
           ++++Q ++  F+F+L  + RAT   +  +L+   ++ S+++    +GS + +K    S  
Sbjct: 393 SALSQEVFESFMFNLEEIERATQSFSEINLLGKSNVSSVYKGILRDGSVAAIKCIAKSSC 452

Query: 116 TSCSSAFV 93
            S  S F+
Sbjct: 453 KSDESEFL 460


>At2g28370.1 68415.m03448 expressed protein contains Pfam PF04535 :
           Domain of unknown function (DUF588);  similar to
           putative ethylene responsive element binding protein
           (GI:22135858) [Arabidopsis thaliana]
          Length = 179

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 281 LLYFQFVFSLGTLARATSFLNFPSLVISCDLIS 183
           L +FQF+F+   L    S  +FPS+   C L++
Sbjct: 44  LRFFQFLFAAAALCVMASTSDFPSVTAFCYLVA 76


>At2g04230.1 68415.m00410 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 448

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 264 KLKVEKLIDACLANKGNSPHQTAWNYVKCYHE 359
           KL++ KL D  L +   +P +  WN  KC  E
Sbjct: 337 KLQILKLTDVYLHDNKTNPDERKWNPPKCAPE 368


>At1g48180.1 68414.m05378 expressed protein ; expression supported
           by MPSS
          Length = 239

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 272 FQFVFSLGTLARATSFLNFPS-LVISCDLISIHR 174
           F+F FSLGT+A+   +    S  V++ DLIS  R
Sbjct: 10  FKFAFSLGTIAKHQDYDESASAAVVALDLISSAR 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,102,427
Number of Sequences: 28952
Number of extensions: 267551
Number of successful extensions: 663
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)