Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0820
         (656 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-3108|AAF53807.1|  284|Drosophila melanogaster CG13083-P...    29   7.3  
AE014134-3107|AAS64720.1|  316|Drosophila melanogaster CG13083-P...    29   7.3  

>AE014134-3108|AAF53807.1|  284|Drosophila melanogaster CG13083-PA,
           isoform A protein.
          Length = 284

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 123 IQRTLQGGQYKVRGHQ*PHQVTVH 194
           I+RTL G ++K   HQ PH++  H
Sbjct: 222 IERTLDGCKHKNPSHQKPHEIWTH 245


>AE014134-3107|AAS64720.1|  316|Drosophila melanogaster CG13083-PB,
           isoform B protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 123 IQRTLQGGQYKVRGHQ*PHQVTVH 194
           I+RTL G ++K   HQ PH++  H
Sbjct: 254 IERTLDGCKHKNPSHQKPHEIWTH 277


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,580,545
Number of Sequences: 53049
Number of extensions: 523739
Number of successful extensions: 696
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2806815600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)